{"id":"W4249865205","doi":"10.1128/9781555818180.ch13","title":"“Stable” Genomes","year":2014,"lang":"en","type":"book-chapter","venue":"ASM Press eBooks","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"","keywords":"Genome; Pulsed-field gel electrophoresis; Biology; Homologous recombination; Bacterial genome size; Salmonella; Genetics; Gene; Bacteria; Escherichia coli; Computational biology; Genotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001640554,0.0003681514,0.0003401806,0.00004162295,0.0001101109,0.00004340864,0.0004174691,0.0004209077,0.00003668855],"category_scores_gemma":[0.00004323888,0.0003476796,0.0001784032,0.000002259392,0.0002190561,7.399099e-7,0.0006847579,0.0003031522,0.0000383198],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001771166,"about_ca_system_score_gemma":0.00009461067,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002886176,"about_ca_topic_score_gemma":0.00003577561,"domain_scores_codex":[0.9985364,0.00003467874,0.0002283996,0.0005525729,0.000269814,0.0003781368],"domain_scores_gemma":[0.9988137,0.00002558459,0.000129156,0.0007589804,0.0001509132,0.000121596],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0004175707,0.00004940461,0.00005749866,0.0009313748,0.003751283,0.0001041383,0.0002871905,0.00001927271,0.1598797,0.4757253,0.2401472,0.1186301],"study_design_scores_gemma":[0.0002179804,0.0001459073,0.000007810914,0.00004026314,0.00004449446,0.000004873587,0.000001678057,0.000004707662,0.008322484,0.0009735767,0.9898619,0.0003743463],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"other","genre_gemma":"other","genre_scores_codex":[0.000134481,0.007315039,0.0001374406,0.000021307,0.0001454502,0.0003274458,0.00004508694,0.00003173053,0.991842],"genre_scores_gemma":[0.004674821,0.001568161,0.0002540388,0.0001922771,0.000760865,0.00007263397,0.0000781624,0.0001060342,0.992293],"genre_candidate":"other","genre_consensus":"other","teacher_disagreement_score":0.7497147,"threshold_uncertainty_score":0.9998975,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02703348366947935,"score_gpt":0.2635757247731409,"score_spread":0.2365422411036615,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}