{"id":"W4254674057","doi":"10.21203/rs.2.15923/v2","title":"Comparative genomic analysis of 142 bacteriophages infecting Salmonella enterica subsp. enterica","year":2020,"lang":"en","type":"preprint","venue":"Research Square","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":0,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Guelph; Université Laval; Canadian Food Inspection Agency","funders":"Ministère de la Défense Nationale; Ministry of Agriculture, Food and Rural Affairs; Ontario Ministry of Agriculture, Food and Rural Affairs; Government of Canada; Genome Canada; Canadian Food Inspection Agency; University of Ottawa; James Madison University","keywords":"Salmonella enterica; Salmonella; Biology; Microbiology; Virology; Genetics; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002341629,0.000430054,0.0004460623,0.001153297,0.0004162716,0.0005027516,0.0002103212,0.0004533332,0.001370042],"category_scores_gemma":[0.0005661697,0.0002736857,0.0006979436,0.000828164,0.0003007012,0.0002033069,0.000448685,0.0004903196,0.0006546794],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003418951,"about_ca_system_score_gemma":0.0003915525,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001842932,"about_ca_topic_score_gemma":0.00234277,"domain_scores_codex":[0.9997503,0.00003181412,0.000014399,0.00007654787,0.00006466504,0.00006216144],"domain_scores_gemma":[0.9995072,0.0001580594,0.00009762566,0.00003712693,0.00009821398,0.0001019106],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003029689,0.00003064807,0.001057514,0.00006837351,0.00001464634,0.00006119459,0.0001264254,0.00004141716,0.9967197,0.00005795075,0.00002735983,0.001491801],"study_design_scores_gemma":[0.00009847921,0.002781818,0.4843963,0.00009054843,0.0003431315,0.001746654,0.001513141,0.000837538,0.4964884,0.0002857951,0.01137026,0.00004797155],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9940189,0.000781083,0.00169116,0.00003582483,0.00001642768,0.00003757358,0.001855575,0.0000254392,0.001537984],"genre_scores_gemma":[0.9816513,0.000612704,0.004499618,0.0001114289,0.00002189391,0.00007142229,0.010448,0.00004848041,0.002535148],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001842932,"threshold_uncertainty_score":0.00458324,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.09019186598099692,"score_gpt":0.3994580502126907,"score_spread":0.3092661842316938,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}