{"id":"W4255855797","doi":"10.1093/nar/gkg056","title":"BIND: the Biomolecular Interaction Network Database","year":2003,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1109,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Lunenfeld-Tanenbaum Research Institute","funders":"Canadian Institutes of Health Research; Synchrotron Light Research Institute; Genome Canada","keywords":"Interaction network; Protein–protein interaction; XML; Biology; Computer science; Domain (mathematical analysis); Computational biology; Focus (optics); Protein Data Bank (RCSB PDB); Interaction information; Cluster analysis; Protein Interaction Networks; Database; World Wide Web; Genetics; Artificial intelligence; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001762165,0.0001229087,0.00009145348,0.00004907288,0.0003948197,0.0001012608,0.0003891116,0.000144116,0.0001555478],"category_scores_gemma":[0.0001600369,0.00008886815,0.00007353986,0.0003044056,0.0001981642,0.000007132667,0.000243669,0.0004120284,0.0001970757],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002486241,"about_ca_system_score_gemma":0.00009585476,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001726646,"about_ca_topic_score_gemma":0.0000200632,"domain_scores_codex":[0.9983793,0.0003035987,0.0002042535,0.0002629967,0.0003054667,0.0005444216],"domain_scores_gemma":[0.9989303,0.0000417658,0.00004537967,0.0007398065,0.0001353307,0.0001073591],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002856927,0.0001955286,0.002131314,0.00005775382,0.0002432806,0.00002542674,0.0003407158,0.0009243396,0.4601614,0.02034965,0.4764557,0.03882923],"study_design_scores_gemma":[0.0003594474,0.0002033807,0.0001985577,0.00001837393,0.000007890878,0.00004345544,0.000351428,0.001048788,0.01877414,0.00115652,0.9776626,0.0001754026],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8255693,0.00415861,0.04315402,0.001836288,0.001500811,0.001405111,0.00004421175,0.00005232337,0.1222793],"genre_scores_gemma":[0.9959854,0.0003519874,0.0013848,0.0004702265,0.0004491335,0.00003111895,0.00009526992,0.00002832921,0.001203709],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5012069,"threshold_uncertainty_score":0.3623938,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03383328354121608,"score_gpt":0.3300870333784426,"score_spread":0.2962537498372266,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}