{"id":"W4255989044","doi":"10.3410/f.718059617.793481632","title":"Faculty Opinions recommendation of Population genomics in bacteria: a case study of Staphylococcus aureus.","year":2013,"lang":"en","type":"dataset","venue":"Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Japan Society for the Promotion of Science; National Institutes of Health; National Science Foundation","keywords":"Biology; Population; Homologous recombination; Genetics; Recombination; Coalescent theory; Genome; Linkage disequilibrium; Homologous chromosome; Evolutionary biology; Single-nucleotide polymorphism; Gene; Phylogenetics; Genotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002966844,0.0002476904,0.0002224435,0.0006740341,0.001460052,0.001529622,0.0006131612,0.001941885,0.02760574],"category_scores_gemma":[0.01028114,0.00009957531,0.0003474895,0.001117746,0.0005491852,0.0008887232,0.001034089,0.0009581535,0.00341178],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0014543,"about_ca_system_score_gemma":0.002335422,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01062418,"about_ca_topic_score_gemma":0.01753398,"domain_scores_codex":[0.9987255,0.00054049,0.00006273163,0.0001345363,0.0004382622,0.0000985269],"domain_scores_gemma":[0.9966635,0.00135979,0.0003547764,0.0002507139,0.0007999335,0.0005712316],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"observational","study_design_scores_codex":[0.0001518998,0.0002721255,0.1098021,0.0005502505,0.00008855474,0.01114201,0.006690159,0.000981576,0.002777762,0.02197188,0.2511837,0.5943879],"study_design_scores_gemma":[0.00004047803,0.0001660152,0.07399956,0.0005971245,0.00004502123,0.01109659,0.01420745,0.003784283,0.001337986,0.01542568,0.8792516,0.00004816228],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"other","genre_gemma":"dataset","genre_scores_codex":[0.3091248,0.02474337,0.02456682,0.2814088,0.005848974,0.0006071791,0.003048068,0.0007139158,0.3499381],"genre_scores_gemma":[0.7493356,0.02065152,0.01894897,0.03059043,0.00371289,0.0001601336,0.001675312,0.0003831078,0.174542],"genre_candidate":"dataset","genre_consensus":null,"teacher_disagreement_score":0.02760574,"threshold_uncertainty_score":0.09235042,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02938596396032139,"score_gpt":0.3328993793771602,"score_spread":0.3035134154168388,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}