{"id":"W4256507157","doi":"10.20944/preprints201807.0397.v1","title":"Genome-Wide Association Study and Selection Signatures Detect Genomic Regions Associated with Seed Yield and Oil Quality in Flax","year":2018,"lang":"en","type":"preprint","venue":"Preprints.org","topic":"Soybean genetics and cultivation","field":"Agricultural and Biological Sciences","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba; University of Saskatchewan; Agriculture and Agri-Food Canada","funders":"Genome Prairie; Agriculture and Agri-Food Canada; Western Grains Research Foundation; Saskatchewan Flax Development Commission; Salesforce; Genome Canada","keywords":"Genome-wide association study; Biology; Quantitative trait locus; Genome; Single-nucleotide polymorphism; Genetics; Genetic association; Gene; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00131862,0.0002534152,0.0003382492,0.00003862791,0.0002168512,0.0000729212,0.000180426,0.0004131904,0.00007502818],"category_scores_gemma":[0.001061953,0.0001320407,0.00004922954,0.0002499966,0.00004672753,0.00005552185,0.0004200685,0.0005201363,0.000009941698],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002680456,"about_ca_system_score_gemma":0.00002708082,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0013076,"about_ca_topic_score_gemma":0.01213983,"domain_scores_codex":[0.9979283,0.000346927,0.0003766729,0.0007942907,0.0002855895,0.0002682448],"domain_scores_gemma":[0.9986339,0.0005137366,0.0004739911,0.0001029626,0.0001966254,0.00007875202],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00004851927,0.0001166785,0.8980298,0.00001027934,0.00008539075,7.859916e-7,0.0005946435,0.00004109794,0.1007077,0.000001318132,0.000005084353,0.0003586994],"study_design_scores_gemma":[0.0002651604,0.0001520331,0.9967144,0.0000593138,0.00004679607,3.411189e-7,0.0004066924,0.00003763375,0.001493759,0.0004693398,0.00006627588,0.0002882921],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985862,0.000100095,0.000002013749,0.0003358258,0.00006176543,0.0005067489,0.00001986818,0.00007830989,0.0003091432],"genre_scores_gemma":[0.9989935,0.000132444,0.00001280703,0.00008138824,0.0001243478,0.00008918964,0.00006474575,0.000003709027,0.0004978853],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09921392,"threshold_uncertainty_score":0.6774312,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08091868907681868,"score_gpt":0.288783900903266,"score_spread":0.2078652118264473,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}