{"id":"W4280505284","doi":"10.1093/ofid/ofac229","title":"Human Herpesvirus-6 Detection in Cerebrospinal Fluid on the BioFire FilmArray Meningitis/Encephalitis Panel in a High Human Immunodeficiency Virus-Prevalence African Setting","year":2022,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Cytomegalovirus and herpesvirus research","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"bioMérieux; National Institute for Health and Care Research; Government of the United Kingdom","keywords":"Medicine; Cerebrospinal fluid; Meningoencephalitis; Virology; Human herpesvirus 6; Polymerase chain reaction; Multiplex polymerase chain reaction; Encephalitis; Meningitis; Human immunodeficiency virus (HIV); Multiplex; Clinical significance; Virus; Pathology; Viral disease; Herpesviridae; Biology; Pediatrics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0009850587,0.0003812746,0.0005402648,0.0005815939,0.002248998,0.0003408151,0.0008146774,0.00009076995,0.005391596],"category_scores_gemma":[0.0002143933,0.000334506,0.0002000832,0.001511622,0.0003034684,0.0003594011,0.0009820584,0.00100663,0.00006809142],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001141598,"about_ca_system_score_gemma":0.0002707721,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.02637913,"about_ca_topic_score_gemma":0.005298743,"domain_scores_codex":[0.9959893,0.0005953389,0.000698038,0.0008412815,0.0008933545,0.0009826644],"domain_scores_gemma":[0.9985438,0.0001754257,0.000222105,0.0007753493,0.00007946182,0.0002038381],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002013165,0.006466321,0.7469867,0.0004931635,0.0002134823,0.001003223,0.002666633,0.0009059087,0.1508168,0.01245431,0.002864679,0.07311561],"study_design_scores_gemma":[0.006030112,0.004907879,0.9650289,0.0006365902,0.0001150705,0.0001896709,0.004677474,0.0004789126,0.005828131,0.003566323,0.007509529,0.001031346],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9815238,0.0004789951,0.000004868304,0.000915969,0.000148455,0.002016463,0.0003347383,0.0001074609,0.01446928],"genre_scores_gemma":[0.9964295,0.00006044548,0.00000582526,0.0007172721,0.00006180157,0.001649806,0.00006828776,0.00007198078,0.0009350932],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2180422,"threshold_uncertainty_score":0.9999107,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02673871538259314,"score_gpt":0.3067935713761566,"score_spread":0.2800548559935634,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}