{"id":"W4280510082","doi":"10.1038/s42003-022-03394-w","title":"Genomic biosurveillance detects a sexual hybrid in the sudden oak death pathogen","year":2022,"lang":"en","type":"article","venue":"Communications Biology","topic":"Plant Pathogens and Resistance","field":"Agricultural and Biological Sciences","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"FPInnovations; Canadian Food Inspection Agency; University of British Columbia","funders":"Natural Resources Canada; FPInnovations; Genome British Columbia; Canadian Food Inspection Agency; Genome Canada","keywords":"Biology; Phytophthora ramorum; Genetics; Genome; Genotype; Reproductive isolation; Oomycete; Evolutionary biology; Phytophthora; Gene; Population","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006367405,0.00008746392,0.000124182,0.00001692296,0.0006830892,0.00001828862,0.001739592,0.00003252989,0.00008188903],"category_scores_gemma":[0.00003691044,0.0000328644,0.00003981093,0.0002915928,0.0001024737,0.0000170512,0.0005752283,0.0002311196,0.00001828802],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003345533,"about_ca_system_score_gemma":0.00001364073,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000220984,"about_ca_topic_score_gemma":0.002481266,"domain_scores_codex":[0.9984446,0.0008924873,0.0001818009,0.0001967553,0.00006237489,0.0002220356],"domain_scores_gemma":[0.9989624,0.0005398106,0.00007961535,0.0003763725,0.00001730026,0.00002452043],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001890407,0.0001306817,0.07815627,0.000001386536,0.000008166583,0.000009636472,0.00008696244,0.000008823454,0.8952722,0.002249855,0.0004711123,0.02358601],"study_design_scores_gemma":[0.0001193445,0.0002016333,0.5915917,0.000001888783,0.000004744953,0.000113051,0.0009089317,0.0002407764,0.00008122429,0.00117627,0.4053853,0.0001751232],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9907427,0.003117742,0.00000184363,0.003705113,0.0000498009,0.000200298,0.001059008,0.00002897902,0.001094456],"genre_scores_gemma":[0.9977294,0.000363506,0.000126099,0.0007555731,0.00003777831,0.0001479468,0.0007782603,7.628799e-7,0.00006065108],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.895191,"threshold_uncertainty_score":0.5253839,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04458148481634284,"score_gpt":0.2495311975147031,"score_spread":0.2049497126983603,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}