{"id":"W4280515821","doi":"10.1101/2022.04.20.488981","title":"<i>Candidatus</i> Nealsonbacteria (OD1) are biomass recycling ectosymbionts of methanogenic archaea in a stable benzene-degrading enrichment culture","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Innotech Alberta; Alberta Innovates; University of Waterloo; Genome Canada; Ontario Genomics; Mitacs; Government of Ontario; University of Alberta","keywords":"Archaea; Biology; Anoxic waters; Candidatus; Metagenomics; Methanogenesis; Bacteria; Euryarchaeota; Phylum; Enrichment culture; Microbiology; 16S ribosomal RNA; Biochemistry; Ecology; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000150742,0.0003647894,0.0002661937,0.0002501522,0.0002092816,0.0004688038,0.0002631415,0.000143016,0.0007209356],"category_scores_gemma":[0.0001839885,0.0001034425,0.0001950315,0.0003294849,0.000129044,0.0001268208,0.0003823072,0.0003183332,0.000333444],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001968159,"about_ca_system_score_gemma":0.0002664416,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003995983,"about_ca_topic_score_gemma":0.004077104,"domain_scores_codex":[0.9997486,0.00001965279,0.00002703112,0.00008501099,0.00006238583,0.0000573595],"domain_scores_gemma":[0.9998887,0.00001399954,0.00001858711,0.00001902892,0.00002811254,0.00003157362],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000735936,0.00001065995,0.001357654,0.00001898274,0.000004288837,0.00003843823,0.0000186213,0.00003189344,0.9971566,0.00002780098,0.00004719703,0.001214227],"study_design_scores_gemma":[0.000009886755,0.0001624512,0.0847936,0.00002083407,0.00003358624,0.0006206408,0.0001865161,0.001380144,0.9067197,0.00005803342,0.005999058,0.00001556467],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9938688,0.0006616051,0.001479424,0.00007885771,0.00001733735,0.00004995436,0.001884991,0.00005144015,0.001907564],"genre_scores_gemma":[0.9816568,0.0005504849,0.006450955,0.00006848312,0.00001510866,0.0000675226,0.007056701,0.00003222084,0.004101617],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003995983,"threshold_uncertainty_score":0.007945478,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01326118320663435,"score_gpt":0.2247380435605267,"score_spread":0.2114768603538923,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}