{"id":"W4280522918","doi":"10.1038/s41467-022-30218-6","title":"Large differences in carbohydrate degradation and transport potential among lichen fungal symbionts","year":2022,"lang":"en","type":"article","venue":"Nature Communications","topic":"Lichen and fungal ecology","field":"Agricultural and Biological Sciences","cited_by":51,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Uppsala Multidisciplinary Center for Advanced Computational Science; Directorate for Biological Sciences; Natural Sciences and Engineering Research Council of Canada; Ludwig-Maximilians-Universität München; Vetenskapsrådet; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; Austrian Science Fund; Canada Research Chairs; Svenska Forskningsrådet Formas; Deutsche Forschungsgemeinschaft; University of Alberta","keywords":"Lichen; Biology; Symbiosis; Fungus; Clade; Fungal protein; Ascomycota; Obligate; Gene; Botany; Phylogenetics; Bacteria; Biochemistry; Genetics; Saccharomyces cerevisiae","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000236169,0.00007833733,0.0001159593,0.00002392105,0.0005950248,0.00001832549,0.0005203637,0.0001256892,0.0001276315],"category_scores_gemma":[0.00001959058,0.00003892204,0.00003510804,0.0003314251,0.00006871725,0.00009283435,0.0002533138,0.0006810307,0.000002122571],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002902238,"about_ca_system_score_gemma":0.000009059289,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002334451,"about_ca_topic_score_gemma":0.01802785,"domain_scores_codex":[0.9991887,0.0002120998,0.0001534943,0.0001648015,0.0001155116,0.0001653807],"domain_scores_gemma":[0.9996173,0.0001171834,0.00005758022,0.0001354553,0.00002650267,0.00004597869],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00001261591,0.0002001046,0.9849824,0.000001330561,0.0000101126,0.000002846127,0.0003048303,0.000001224398,0.009331618,0.003920041,0.00008986888,0.001143015],"study_design_scores_gemma":[0.0001268101,0.00005448865,0.9940354,0.000002100747,0.00001000706,0.000003287472,0.0005896529,0.0005310845,0.00002226051,0.0002526266,0.00428191,0.00009040051],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.99475,0.001164238,0.000001205842,0.003225498,0.0001036669,0.0001704718,0.0001171988,0.0000329965,0.000434787],"genre_scores_gemma":[0.9987967,0.0001547038,0.00004093713,0.0002805536,0.00002719309,0.0000783489,0.0004751099,7.920619e-7,0.0001456619],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0177944,"threshold_uncertainty_score":0.9998906,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01498538193537836,"score_gpt":0.2242289323449696,"score_spread":0.2092435504095913,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}