{"id":"W4280541070","doi":"10.1007/s00122-022-04111-1","title":"Genome-wide association study reveals novel quantitative trait loci and candidate genes of lint percentage in upland cotton based on the CottonSNP80K array","year":2022,"lang":"en","type":"review","venue":"Theoretical and Applied Genetics","topic":"Research in Cotton Cultivation","field":"Agricultural and Biological Sciences","cited_by":29,"is_retracted":false,"has_abstract":false,"ca_institutions":"Ministry of Agriculture","funders":"National Natural Science Foundation of China","keywords":"Biology; Candidate gene; Quantitative trait locus; Lint; Single-nucleotide polymorphism; Genome-wide association study; Genetics; Linkage disequilibrium; Gene; Genetic association; Genotype; Agronomy","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001875604,0.0003086779,0.0008057822,0.00004264195,0.0002063729,0.00007544368,0.0003079862,0.0001758748,0.0004026497],"category_scores_gemma":[0.0003212117,0.0001155545,0.00009408745,0.0003554024,0.000330219,0.00001345597,0.0001345333,0.0004704218,0.000002828794],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001068354,"about_ca_system_score_gemma":0.00003212509,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002566357,"about_ca_topic_score_gemma":0.00004900846,"domain_scores_codex":[0.9974608,0.0005854664,0.00057177,0.0004840783,0.0005716099,0.0003262595],"domain_scores_gemma":[0.9939411,0.005490852,0.000310082,0.0001162288,0.00004125394,0.0001005434],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0008519799,0.003742963,0.01355736,0.003745207,0.0005734615,0.00001722802,0.003060074,0.0001876523,0.0226249,0.09182594,0.0001879678,0.8596253],"study_design_scores_gemma":[0.00439669,0.01026093,0.1629729,0.002727766,0.001713971,0.00001061899,0.01417032,0.001231895,0.0009992887,0.02441331,0.7732596,0.003842724],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"review","genre_scores_codex":[0.776004,0.2156904,0.00004104971,0.000946434,0.00006443878,0.004881741,0.001037236,0.00002831662,0.001306378],"genre_scores_gemma":[0.3512813,0.6477369,0.0001060972,0.000147098,0.00006390222,0.0002765203,0.0003418303,0.000007175574,0.00003912859],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.8557826,"threshold_uncertainty_score":0.4712174,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05997783816509134,"score_gpt":0.3134661967002794,"score_spread":0.2534883585351881,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}