{"id":"W4280552399","doi":"10.1101/2022.04.20.488689","title":"Whole genome sequencing suggests that “non-pathogenicity on banana (NPB)” is the ancestral state of the <i>Ralstonia solanacearum</i> IIB-4 lineage","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"College of Agricultural and Environmental Sciences, University of California, Davis; Institute of Food and Agricultural Sciences, University of Florida; University of California, Davis; University of Florida; U.S. Department of Agriculture","keywords":"Biology; Ralstonia solanacearum; Virulence; Genetics; Subclade; Genome; Phylogenetic tree; Whole genome sequencing; Phylogenetics; Population; GenBank; Lineage (genetic); Gene; Clade; Pathogen","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001973101,0.0004051471,0.000238933,0.0005219457,0.0004208481,0.0005776847,0.0002104684,0.0003362481,0.00174211],"category_scores_gemma":[0.0003691954,0.0001911499,0.000445912,0.0006964523,0.0002015682,0.0002544393,0.0003760388,0.0006328159,0.000692321],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003281595,"about_ca_system_score_gemma":0.0003133513,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00418464,"about_ca_topic_score_gemma":0.005438651,"domain_scores_codex":[0.999869,0.000009797093,0.00000936186,0.00005600033,0.00003034169,0.00002542302],"domain_scores_gemma":[0.9997486,0.00003560428,0.00007942727,0.00003152263,0.00006487433,0.00003999915],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002954666,0.0000417115,0.05232984,0.0001339907,0.00006486073,0.0001589419,0.0001858639,0.0002741897,0.9357975,0.0002649531,0.0004805,0.009972257],"study_design_scores_gemma":[0.00003363047,0.0003139717,0.9058018,0.0001151349,0.0002177743,0.0009598646,0.0007529833,0.003751829,0.06703275,0.0005733158,0.02040714,0.00003979012],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9858711,0.0003444728,0.003952409,0.0001526851,0.00002606107,0.00003988943,0.006002808,0.0001498889,0.003460648],"genre_scores_gemma":[0.961794,0.0004421598,0.009194548,0.0003351702,0.00002198277,0.00005894407,0.02539784,0.0001163119,0.002639034],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00418464,"threshold_uncertainty_score":0.00832057,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02449966441857197,"score_gpt":0.2049378176269768,"score_spread":0.1804381532084048,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}