{"id":"W4280558569","doi":"10.3390/microbiolres13020020","title":"Assessing Microbial Monitoring Methods for Challenging Environmental Strains and Cultures","year":2022,"lang":"en","type":"article","venue":"Microbiology Research","topic":"Pharmaceutical and Antibiotic Environmental Impacts","field":"Environmental Science","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Genome Canada","keywords":"Fastidious organism; Pseudomonas putida; Biology; 16S ribosomal RNA; Bacteria; Bacillus subtilis; Bacterial growth; Biomass (ecology); Environmental DNA; Microbiology; Operational taxonomic unit; DNA extraction; Pseudomonas; Food science; Polymerase chain reaction; Ecology; Biochemistry; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001574228,0.0001468507,0.0001636225,0.00005848588,0.001313633,0.00005717413,0.0002822751,0.00006989653,0.001550413],"category_scores_gemma":[0.00003810408,0.0001366477,0.00005566063,0.0001087731,0.0007395534,0.000166992,0.001324629,0.000561338,0.00005248668],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000336323,"about_ca_system_score_gemma":0.000005815287,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002268522,"about_ca_topic_score_gemma":8.40081e-7,"domain_scores_codex":[0.9979088,0.0005949198,0.0001701965,0.000490151,0.0001152532,0.0007206615],"domain_scores_gemma":[0.9994435,0.0002295371,0.00003497932,0.0001416104,0.000001731829,0.0001485918],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001803038,0.0001231997,0.005702628,0.000008195339,0.00001583702,0.000005779114,0.0003132636,0.0001253527,0.9750965,0.000009934531,0.00038872,0.01819253],"study_design_scores_gemma":[0.001582713,0.0005136862,0.03559124,0.00001845047,0.00002995994,0.0004456321,0.006076225,0.0006482247,0.8200413,0.0006982058,0.1337612,0.0005931157],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971948,0.0005918132,0.0003773807,0.0006102355,0.0001612102,0.0003813596,0.00007540686,0.00002242805,0.0005854219],"genre_scores_gemma":[0.9898288,0.0001059163,0.009189906,0.0001089872,0.00007153496,0.00003676809,0.00003524806,0.00002161942,0.0006012538],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1550552,"threshold_uncertainty_score":0.9999865,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1561300714436448,"score_gpt":0.4897202058265604,"score_spread":0.3335901343829156,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}