{"id":"W4280558569","doi":"10.3390/microbiolres13020020","title":"Assessing Microbial Monitoring Methods for Challenging Environmental Strains and Cultures","year":2022,"lang":"en","type":"article","venue":"Microbiology Research","topic":"Pharmaceutical and Antibiotic Environmental Impacts","field":"Environmental Science","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Genome Canada","keywords":"Fastidious organism; Pseudomonas putida; Biology; 16S ribosomal RNA; Bacteria; Bacillus subtilis; Bacterial growth; Biomass (ecology); Environmental DNA; Microbiology; Operational taxonomic unit; DNA extraction; Pseudomonas; Food science; Polymerase chain reaction; Ecology; Biochemistry; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003782265,0.001642334,0.0009657398,0.001509545,0.0007266098,0.001507365,0.001395507,0.001691641,0.0009146464],"category_scores_gemma":[0.006389453,0.0004501272,0.0006158571,0.001486791,0.0008220636,0.001222384,0.001695571,0.001077388,0.0008090294],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006074804,"about_ca_system_score_gemma":0.0007354165,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001169466,"about_ca_topic_score_gemma":0.002874198,"domain_scores_codex":[0.9913377,0.001790354,0.0005278115,0.001425928,0.004603028,0.000315334],"domain_scores_gemma":[0.9958903,0.001514094,0.0008539403,0.0003456897,0.001285805,0.0001101832],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001218582,0.0002320702,0.01256394,0.001007014,0.00007432669,0.00007739906,0.0002493005,0.001946759,0.9460713,0.0003367307,0.0002168455,0.03710248],"study_design_scores_gemma":[0.00001400072,0.001630211,0.01983705,0.0002032107,0.0001170594,0.0003510278,0.0006510753,0.008075954,0.9616679,0.0008063502,0.006587446,0.00005872247],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5579211,0.009387969,0.4189118,0.0007690528,0.0004356306,0.001645171,0.00286561,0.0007736029,0.007290109],"genre_scores_gemma":[0.5806934,0.01238465,0.3950331,0.0005407495,0.0001826507,0.003710569,0.003054898,0.0002199302,0.004179929],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003782265,"threshold_uncertainty_score":0.02000278,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1561300714436448,"score_gpt":0.4897202058265604,"score_spread":0.3335901343829156,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}