{"id":"W4280563818","doi":"10.1146/annurev-phyto-021621-121935","title":"Diversity, Evolution, and Function of <i>Pseudomonas syringae</i> Effectoromes","year":2022,"lang":"en","type":"review","venue":"Annual Review of Phytopathology","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":54,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"","keywords":"Pseudomonas syringae; Biology; Effector; Horizontal gene transfer; Virulence; Phylogenetic tree; Pathogen; Evolutionary biology; Phylogenetics; Genetics; Function (biology); Host (biology); Computational biology; Gene; Cell biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007756171,0.0002958274,0.002125839,0.00003120285,0.0002759209,0.000002129461,0.0003535409,0.0001406881,0.0002447649],"category_scores_gemma":[0.0002422412,0.0001233242,0.0004455564,0.0003860198,0.0001746578,0.00007276132,0.001953025,0.0002105871,0.00000655755],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003648075,"about_ca_system_score_gemma":0.00002309685,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003165201,"about_ca_topic_score_gemma":0.00002309889,"domain_scores_codex":[0.997843,0.0006798001,0.0006337652,0.0004070319,0.0002201263,0.0002162317],"domain_scores_gemma":[0.9983067,0.0006614811,0.0007908212,0.0001104505,0.00008358918,0.00004699264],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00000793758,0.00005962273,0.0003953768,0.05650321,0.00007613144,0.00001336021,0.00003155114,4.328971e-9,0.0002294989,0.000200698,0.0007804363,0.9417022],"study_design_scores_gemma":[0.0000450081,0.0004861414,0.005075129,0.01386613,0.0008806002,0.0001640588,0.00002679463,9.525001e-9,0.000001821429,0.00005704306,0.9792008,0.0001964139],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.001765456,0.9957595,5.496192e-7,0.00002435904,0.00030751,0.0005760065,0.001306926,0.00002109313,0.0002385847],"genre_scores_gemma":[0.0005569842,0.9989263,0.00001018189,0.00006369234,0.0000933635,0.00006153149,0.0002459638,0.000001936558,0.0000400321],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9784204,"threshold_uncertainty_score":0.5029016,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02728010097511849,"score_gpt":0.2574332004028481,"score_spread":0.2301530994277296,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}