{"id":"W4280590972","doi":"10.1093/gbe/evac074","title":"Genomics of Diversification of <i>Pseudomonas aeruginosa</i> in Cystic Fibrosis Lung-like Conditions","year":2022,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ontario Genomics; University of Ottawa","funders":"","keywords":"Biology; Pseudomonas aeruginosa; Nonsynonymous substitution; Biological dispersal; Genetics; Population; Experimental evolution; Cystic fibrosis; Evolutionary biology; Phenotype; Gene; Genome; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000153666,0.0001795927,0.0002749318,0.0004139245,0.0002459722,0.0002707235,0.0001396704,0.0005000014,0.0007145655],"category_scores_gemma":[0.0003730801,0.0001357554,0.000300364,0.0003915581,0.0002652541,0.0001680493,0.0003188693,0.0004224084,0.000122742],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003395267,"about_ca_system_score_gemma":0.0001376437,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001589441,"about_ca_topic_score_gemma":0.00222014,"domain_scores_codex":[0.9998595,0.00002505087,0.000007021707,0.00005341719,0.00002976919,0.00002521428],"domain_scores_gemma":[0.999775,0.00006773206,0.00008245009,0.00001329713,0.00001762783,0.00004383445],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003201596,0.00005514739,0.04009807,0.00007665005,0.00006671282,0.0002413066,0.000181152,0.001128712,0.9496829,0.0003385899,0.0001547929,0.007655826],"study_design_scores_gemma":[0.000009674798,0.0002240268,0.9818224,0.0000141716,0.0000274737,0.0006625988,0.0001899296,0.00212705,0.01362702,0.0002890153,0.0009908811,0.00001572824],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981552,0.0002049271,0.0005709855,0.00004925108,0.000002695483,0.000007836159,0.0005493598,0.00001728148,0.000442419],"genre_scores_gemma":[0.9973895,0.0001682322,0.001199452,0.0001312236,0.000004532952,0.00001807253,0.0008305805,0.00001881783,0.0002395848],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001589441,"threshold_uncertainty_score":0.003160357,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005028172435282407,"score_gpt":0.2244764494155529,"score_spread":0.2194482769802704,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}