{"id":"W4280592202","doi":"10.1042/ebc20210097","title":"Indirect recognition of pathogen effectors by NLRs","year":2022,"lang":"en","type":"review","venue":"Essays in Biochemistry","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"","keywords":"Effector; Biology; Decoy; Pattern recognition receptor; Pathogen-associated molecular pattern; Pathogen; Computational biology; Receptor; Cell biology; Immunology; Genetics; Innate immune system","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002852059,0.0002254065,0.0006276012,0.000020949,0.00008193154,0.00001815533,0.000360941,0.0002603258,0.002149339],"category_scores_gemma":[0.00009506448,0.00009877269,0.0002617482,0.0004114723,0.00003928001,0.00003314085,0.0001290824,0.0005081335,0.00001752754],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000109899,"about_ca_system_score_gemma":0.00002372459,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001280201,"about_ca_topic_score_gemma":0.00001117097,"domain_scores_codex":[0.9988186,0.0001952783,0.0004000839,0.0002836608,0.0001229335,0.0001794242],"domain_scores_gemma":[0.9990634,0.0004790261,0.0003171147,0.00008715189,0.00001517527,0.00003815207],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000004320122,0.0001230704,0.00002370114,0.001143787,0.00002407457,0.00000441694,0.000005109363,9.57909e-9,0.05713092,9.90513e-8,0.002306599,0.9392339],"study_design_scores_gemma":[0.00003994575,0.00004494088,0.00001627087,0.001942224,0.00005741076,0.00003787184,0.00004429068,1.39399e-7,0.0117064,0.00001131524,0.985844,0.0002551811],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.05857307,0.9347908,3.746195e-8,0.000005680351,0.0001766929,0.0002092405,0.003568119,0.00002467078,0.002651665],"genre_scores_gemma":[0.001701309,0.9889552,0.000007628127,0.000008753937,0.00006502804,0.00009109149,0.008958668,0.00000208773,0.0002102038],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9835374,"threshold_uncertainty_score":0.9987628,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03665710903839874,"score_gpt":0.2631436563893795,"score_spread":0.2264865473509807,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}