{"id":"W4280625000","doi":"10.1101/2022.05.16.492222","title":"Second-generation transfer mediates efficient propagation of ICE <i>Bs1</i> in biofilms","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"Université de Sherbrooke","keywords":"Biofilm; Horizontal gene transfer; Multicellular organism; Gene transfer; Mobile genetic elements; Biology; Bacteria; Gene; Microbiology; Biological system; Genetics; Plasmid; Phylogenetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001919244,0.0002795156,0.0002241781,0.0001286343,0.0001285605,0.0003824432,0.0001905724,0.0002825618,0.001016057],"category_scores_gemma":[0.0002368745,0.0001129844,0.0002392188,0.00007233142,0.0001016232,0.000172265,0.0004859484,0.0004978986,0.0004910823],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002227833,"about_ca_system_score_gemma":0.0001893876,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001237002,"about_ca_topic_score_gemma":0.0007817735,"domain_scores_codex":[0.9997922,0.00003384807,0.00001230757,0.00003633792,0.00006441834,0.00006107911],"domain_scores_gemma":[0.9998413,0.00003719098,0.00004586175,0.00002353726,0.00002682217,0.00002515153],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001040959,0.00001191143,0.0001440936,0.00001234164,0.000001484782,0.00001684419,0.00001516958,0.00001412213,0.9991325,0.00005901068,0.0000244093,0.0005578513],"study_design_scores_gemma":[0.000007514208,0.0001998726,0.006736069,0.00001016528,0.00001026291,0.0001986758,0.00008475264,0.001454244,0.9892991,0.00005890446,0.001932994,0.000007462383],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9937011,0.000416627,0.004571794,0.00005641289,0.00002418418,0.00002305431,0.00009408898,0.00004516307,0.001067629],"genre_scores_gemma":[0.9952291,0.0002426292,0.002666574,0.00002530497,0.000006202103,0.00002389791,0.0001927668,0.00002184706,0.001591722],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001237002,"threshold_uncertainty_score":0.003399014,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01061729447949041,"score_gpt":0.2066468900282427,"score_spread":0.1960295955487523,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}