{"id":"W4280626720","doi":"10.1101/2022.05.07.490914","title":"Population genomics provide insights into the global genetic structure of <i>Colletotrichum graminicola,</i> the causal agent of maize anthracnose","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph; Ministry of Agriculture, Food and Rural Affairs","funders":"Agencia Estatal de Investigación; Junta de Castilla y León; Ministerio de Ciencia e Innovación; Conselho Nacional de Desenvolvimento Científico e Tecnológico","keywords":"Biology; Graminicola; Genetic diversity; Nucleotide diversity; Genetics; Population; Evolutionary biology; Population genomics; Biological dispersal; Linkage disequilibrium; Genomics; Genome; Single-nucleotide polymorphism; Gene; Haplotype; Genotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002638449,0.000272275,0.000221526,0.00074737,0.0002051667,0.0004578622,0.0001715349,0.0003728047,0.001183371],"category_scores_gemma":[0.0003420198,0.00009778969,0.0003536027,0.0007313458,0.0001381867,0.0002250154,0.0002582685,0.0003753073,0.0001954274],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002840039,"about_ca_system_score_gemma":0.0001602898,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001774526,"about_ca_topic_score_gemma":0.002505525,"domain_scores_codex":[0.9998994,0.00001496754,0.000004429595,0.00004890984,0.00001278898,0.00001952504],"domain_scores_gemma":[0.9998135,0.00005971821,0.00005907816,0.00001825953,0.00002873408,0.00002071919],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001700306,0.00008016022,0.07961033,0.0001678834,0.0002595334,0.0001637956,0.0004586029,0.003189031,0.8956262,0.0009405704,0.000317649,0.01901619],"study_design_scores_gemma":[0.00001659155,0.0001414675,0.9588785,0.00003072705,0.000186319,0.0003706699,0.0004311855,0.01092995,0.02182085,0.001516487,0.005654464,0.00002277523],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9899203,0.0003837854,0.007254258,0.00004317586,0.000004020118,0.00001419854,0.001121121,0.0000757624,0.001183546],"genre_scores_gemma":[0.9952142,0.0001479242,0.00293184,0.00004323175,0.000005403668,0.00001378046,0.001333763,0.0000179594,0.0002916951],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001774526,"threshold_uncertainty_score":0.003958762,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00705757025292459,"score_gpt":0.2131031227282917,"score_spread":0.2060455524753671,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}