{"id":"W4280645072","doi":"10.1101/2022.04.26.489235","title":"Whole genome sequencing of three mesorhizobia isolated from northern Canada to identify genomic adaptations promoting nodulation in cold climates","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Queen's University","funders":"Natural Sciences and Engineering Research Council of Canada; Queen's University","keywords":"Rhizobia; Biology; Mesorhizobium; Nitrogen fixation; Whole genome sequencing; Gene; Genome; Genetics; Phylogenetic tree; Symbiosis; Evolutionary biology; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001092771,0.0004118057,0.0003684716,0.000861256,0.001196433,0.0006078923,0.0002755044,0.0002488362,0.0008330771],"category_scores_gemma":[0.0002236574,0.00016355,0.0004236236,0.001465778,0.0002185507,0.00006381027,0.000420662,0.0003441512,0.0002594324],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002437126,"about_ca_system_score_gemma":0.003847731,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.6816283,"about_ca_topic_score_gemma":0.8297883,"domain_scores_codex":[0.9998398,0.00000308943,0.000003697797,0.00004191981,0.00005502179,0.0000563763],"domain_scores_gemma":[0.999788,0.00001313253,0.00002481114,0.00001049367,0.00009348733,0.00007013867],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005559032,0.00006702394,0.05498813,0.0001553405,0.00009142052,0.0004824071,0.001038893,0.0003889101,0.9263968,0.0001956331,0.001027205,0.01461222],"study_design_scores_gemma":[0.00002710058,0.00007163821,0.9681639,0.00002236526,0.00008419987,0.0003671787,0.0008753177,0.0006427922,0.02041479,0.00005103344,0.009261664,0.00001801141],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9804277,0.0007221719,0.001195861,0.00009923231,0.00001700912,0.0000805981,0.01515274,0.00005766296,0.00224689],"genre_scores_gemma":[0.9476693,0.0009500767,0.005980039,0.00021436,0.00001021859,0.00007041639,0.03817221,0.00006732065,0.006866026],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3183717,"threshold_uncertainty_score":0.6404932,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01875802087103538,"score_gpt":0.2078728556409899,"score_spread":0.1891148347699545,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}