{"id":"W4281294278","doi":"10.1101/2022.05.20.492862","title":"Lysogenized phages of methanotrophic bacteria show a broad and untapped genetic diversity","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"","keywords":"Prophage; Biology; Methanotroph; Bacteria; Bioplastic; Microbial ecology; Microbiology; Thermophile; Genetics; Bacteriophage; Ecology; Gene; Escherichia coli; Anaerobic oxidation of methane; Methane","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001288428,0.0002827435,0.0001820499,0.0004826764,0.0001735172,0.0004550603,0.0001344751,0.0001714206,0.0006404296],"category_scores_gemma":[0.0002213558,0.0001256601,0.0002770651,0.0003880826,0.0001566597,0.0001562581,0.0003815735,0.0002940396,0.0002105261],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001250291,"about_ca_system_score_gemma":0.0001497891,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005046052,"about_ca_topic_score_gemma":0.0004426094,"domain_scores_codex":[0.999844,0.00001428894,0.00001733357,0.00005093225,0.00003964145,0.00003380765],"domain_scores_gemma":[0.9997399,0.00005166208,0.00007592922,0.00003145455,0.000045127,0.00005578869],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001229474,0.00001817092,0.006591225,0.00002639324,0.00001082785,0.00004935756,0.0000533566,0.00003308733,0.9908275,0.00002799873,0.00001301173,0.002226132],"study_design_scores_gemma":[0.00002628028,0.0005945553,0.2933345,0.00003193688,0.000115787,0.001559732,0.0005888363,0.001616229,0.697804,0.0001922543,0.004109636,0.00002621885],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979429,0.0002104023,0.0011462,0.00001617844,0.000004447429,0.00001080518,0.0003536848,0.00002800394,0.0002874408],"genre_scores_gemma":[0.9952916,0.0001427854,0.002277359,0.00002570871,0.000004822285,0.00002211719,0.001437625,0.00001667889,0.0007812709],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006404296,"threshold_uncertainty_score":0.002142429,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01209145794594483,"score_gpt":0.2105978175503326,"score_spread":0.1985063596043878,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}