{"id":"W4281298849","doi":"10.1101/2022.05.06.22274627","title":"HostSeq : A Canadian Whole Genome Sequencing and Clinical Data Resource","year":2022,"lang":"en","type":"preprint","venue":"medRxiv","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta; Women's College Hospital; Queen's University; BC Children's Hospital; University of British Columbia; St. Paul's Hospital; Alberta Children's Hospital; Lunenfeld-Tanenbaum Research Institute; University of Calgary; University of Ottawa; Simon Fraser University; McGill University; St. Michael's Hospital; Jewish General Hospital; Canada's Michael Smith Genome Sciences Centre; University of Waterloo; Sinai Health System; Ottawa Hospital; University Health Network; University of Toronto; Hospital for Sick Children","funders":"Ministry of Colleges and Universities; Hospital for Sick Children; Michael Smith Health Research BC; Innovation, Science and Economic Development Canada; Children's Hospital Foundation; Genome Alberta; Alberta Children's Hospital Foundation; Canadian Institutes of Health Research; Genome Canada","keywords":"Mandate; Resource (disambiguation); Data science; Data sharing; Public health; Geography; Computer science; Medicine; Political science","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.008554633,0.001466204,0.00122289,0.0062334,0.003221448,0.004604095,0.003048683,0.001262186,0.06896917],"category_scores_gemma":[0.02463142,0.0011596,0.001148729,0.009896046,0.0008584257,0.001313559,0.004475209,0.001928889,0.02074477],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.01110491,"about_ca_system_score_gemma":0.06381651,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.738851,"about_ca_topic_score_gemma":0.7915347,"domain_scores_codex":[0.9951863,0.0006585402,0.0003853515,0.0009189426,0.002268617,0.0005823052],"domain_scores_gemma":[0.978542,0.00402878,0.0009376663,0.002811461,0.01044775,0.003232386],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0009220195,0.00003820954,0.008118907,0.0007247402,0.0002012861,0.0001641642,0.0004295828,0.001419945,0.002446544,0.005685742,0.9389706,0.04087831],"study_design_scores_gemma":[0.0005834578,0.00004794047,0.02727889,0.0004623304,0.0001349541,0.000139194,0.0003509335,0.002562513,0.002456755,0.006294164,0.9594961,0.0001927023],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.002711307,0.0004310926,0.01017017,0.001836376,0.0002432537,0.000413099,0.9668051,0.005104747,0.01228491],"genre_scores_gemma":[0.01338753,0.0006586933,0.04061413,0.001152289,0.0001361821,0.0008670708,0.9314915,0.002972221,0.008720411],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.261149,"threshold_uncertainty_score":0.525374,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1671987884415923,"score_gpt":0.4114305817606541,"score_spread":0.2442317933190618,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}