{"id":"W4281385522","doi":"10.1101/2022.05.18.492400","title":"Haplotype-phased and chromosome-level genome assembly of <i>Puccinia polysora</i> , a giga-scale fungal pathogen causing southern corn rust","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Yeasts and Rust Fungi Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Institute of Microbiology, Chinese Academy of Sciences; Beijing Forestry University; Chinese Academy of Sciences","keywords":"Biology; Genome; Genetics; Haplotype; Population; Genome project; Genome size; Gene; Synteny; Reference genome; Chromosome; Sequence assembly; Transcriptome; Genotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004902069,0.0006580994,0.0007657857,0.000164895,0.0003270833,0.0000938006,0.0004200909,0.0005190198,0.00008376208],"category_scores_gemma":[0.00008117663,0.0006834369,0.0002351081,0.0002541757,0.0002193391,0.000008147764,0.001196429,0.0005269377,0.00001142164],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008359408,"about_ca_system_score_gemma":0.0005270509,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001308101,"about_ca_topic_score_gemma":0.00001834453,"domain_scores_codex":[0.9970344,0.0001634067,0.0006202249,0.00119332,0.0003841306,0.0006044747],"domain_scores_gemma":[0.9977161,0.00002371454,0.0005584578,0.00112044,0.0003362655,0.0002449665],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001154332,0.0001740922,0.00762649,0.0003035593,0.0003942428,0.00004837243,0.0000506041,0.00002891526,0.9911167,0.00001665505,0.0001212112,0.00000372194],"study_design_scores_gemma":[0.002169522,0.0006341355,0.08204737,0.000291387,0.0006655774,8.097123e-7,0.0001545553,0.00005966589,0.8868705,0.00000140064,0.02484442,0.002260649],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9849515,0.008953585,0.0004948766,0.00008165019,0.0005024758,0.0005946441,0.004311269,0.00007603675,0.00003398897],"genre_scores_gemma":[0.9963929,0.0007212025,0.001803405,0.0001477814,0.0005681661,0.0001207759,0.000009945555,0.0001852978,0.00005051733],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1042462,"threshold_uncertainty_score":0.9995617,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01430123571446286,"score_gpt":0.2174085584677918,"score_spread":0.203107322753329,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}