{"id":"W4281385522","doi":"10.1101/2022.05.18.492400","title":"Haplotype-phased and chromosome-level genome assembly of <i>Puccinia polysora</i> , a giga-scale fungal pathogen causing southern corn rust","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Yeasts and Rust Fungi Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Institute of Microbiology, Chinese Academy of Sciences; Beijing Forestry University; Chinese Academy of Sciences","keywords":"Biology; Genome; Genetics; Haplotype; Population; Genome project; Genome size; Gene; Synteny; Reference genome; Chromosome; Sequence assembly; Transcriptome; Genotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002043241,0.0003804991,0.0003104722,0.000350924,0.0003546307,0.0004669983,0.0002656823,0.000235489,0.001324877],"category_scores_gemma":[0.0003822072,0.0002657071,0.0005298725,0.0003864802,0.0001179091,0.0002832888,0.0003814044,0.0005677143,0.0007260332],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002657327,"about_ca_system_score_gemma":0.0003851732,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002696642,"about_ca_topic_score_gemma":0.003663578,"domain_scores_codex":[0.9998738,0.00001242211,0.000007991443,0.00005846712,0.00002933842,0.00001808264],"domain_scores_gemma":[0.9998609,0.00002860145,0.00002639186,0.00002385974,0.00003665227,0.0000235785],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003189201,0.00002418958,0.003734413,0.0002131045,0.00004439909,0.0001732798,0.0001444863,0.00207275,0.9735759,0.0003359716,0.001356886,0.01800559],"study_design_scores_gemma":[0.00008718127,0.0005894077,0.09064227,0.00007939339,0.0001800985,0.0006031929,0.0002705562,0.06806915,0.7950546,0.001213139,0.04311036,0.0001006739],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.893575,0.0006097415,0.07626761,0.00018597,0.00008764963,0.0001952657,0.02182035,0.004677778,0.002580512],"genre_scores_gemma":[0.7844506,0.0004358723,0.1478912,0.0001280967,0.00003077896,0.0002142484,0.06232132,0.001399222,0.003128588],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002696642,"threshold_uncertainty_score":0.005361855,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01430123571446286,"score_gpt":0.2174085584677918,"score_spread":0.203107322753329,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}