{"id":"W4281651780","doi":"10.1101/2022.06.03.494778","title":"Molecular epidemiology of carbapenemase-producing <i>Acinetobacter</i> spp. from Israel, 2001-2006: earliest report of <i>bla</i> <sub>NDM</sub> predating the oldest known <i>bla</i> <sub>NDM</sub> -positive strains","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Centre Intégré de Santé et de Services Sociaux des Laurentides; Centre intégré de santé et de services sociaux de Chaudière-Appalaches; Hôpital Charles-Le Moyne; Centre Intégré Universitaire de Santé et de Services Sociaux du Saguenay–Lac-Saint-Jean; Centre Intégré Universitaire de Santé et de Services Sociaux du Centre-Sud-de-l'Île-de-Montréal; Centre Hospitalier Universitaire de Sherbrooke; Université de Sherbrooke","funders":"Fonds de Recherche du Québec - Santé; Université de Sherbrooke; Faculty of Medicine and Health, University of Sydney; Canadian Institute for Advanced Research","keywords":"Biology; Minion; Acinetobacter baumannii; Acinetobacter; Microbiology; Molecular epidemiology; rpoB; Genetics; Gene; Genome; Genotype; Antibiotics; Nanopore sequencing; Bacteria; 16S ribosomal RNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002376228,0.0002251644,0.0001490208,0.001339069,0.0002799776,0.0005439044,0.0003033182,0.0002970817,0.001096615],"category_scores_gemma":[0.0004366904,0.0002236724,0.0001575216,0.0008114587,0.0002551069,0.0002962369,0.0002882383,0.0002504178,0.0002052541],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000583154,"about_ca_system_score_gemma":0.0004197433,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01187267,"about_ca_topic_score_gemma":0.013794,"domain_scores_codex":[0.999749,0.00003161555,0.00003707798,0.0000756605,0.0000544028,0.00005232645],"domain_scores_gemma":[0.9993854,0.00006839579,0.0002198948,0.00001850906,0.0002019285,0.0001058265],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00007292868,0.00003304295,0.9882236,0.00003438631,0.00001468107,0.0001387337,0.0002317381,0.00008610006,0.007188309,0.00001898973,0.0001363112,0.003821208],"study_design_scores_gemma":[0.000003319739,0.00007393562,0.9962971,0.00002941189,0.00001849045,0.000549711,0.0008327747,0.0001641028,0.001452246,0.00001243482,0.0005623039,0.000004246832],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988809,0.0001376696,0.00006098493,0.0000220083,0.000001871214,0.000008655559,0.0004757708,0.000003541694,0.000408537],"genre_scores_gemma":[0.9982755,0.0002131753,0.0001839846,0.0000264323,0.000004301683,0.000008317933,0.001089677,0.000002362056,0.0001962402],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01187267,"threshold_uncertainty_score":0.02360713,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01287485953705265,"score_gpt":0.233340226190304,"score_spread":0.2204653666532514,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}