{"id":"W4281652648","doi":"10.1128/mra.00277-22","title":"Complete Genome Sequences of Three Listeria monocytogenes Strains from Microgreens Obtained with MinION and MiSeq Sequencing","year":2022,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Food Inspection Agency","funders":"","keywords":"Listeria monocytogenes; Minion; Biology; Microbiology; Genome; Pathogen; Listeria; Whole genome sequencing; Opportunistic pathogen; Bacteria; Human pathogen; Genetics; Gene; Nanopore sequencing; Pseudomonas aeruginosa","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004458882,0.001198155,0.0007180144,0.001970947,0.001317731,0.0007936308,0.0008775109,0.0005422087,0.005379659],"category_scores_gemma":[0.0007009779,0.0004912443,0.0006690724,0.003584401,0.0004776219,0.0003078252,0.0008544953,0.001066746,0.003703889],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001900953,"about_ca_system_score_gemma":0.005007893,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.07843238,"about_ca_topic_score_gemma":0.1362654,"domain_scores_codex":[0.9994535,0.00002084706,0.00003951103,0.0001238133,0.0002448977,0.000117418],"domain_scores_gemma":[0.9994076,0.00005754778,0.00007745694,0.00006977114,0.000284822,0.0001027271],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001039018,0.00009682942,0.00375193,0.0009124663,0.00005135915,0.0005026847,0.0007377903,0.0005477454,0.9401621,0.00089422,0.01402166,0.03728217],"study_design_scores_gemma":[0.0001656677,0.0006468601,0.1118894,0.0003257949,0.0004224241,0.001704662,0.001116661,0.002565868,0.4757591,0.001009647,0.404092,0.0003018155],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.3812481,0.004273849,0.05230821,0.0008659329,0.0004029838,0.001171994,0.5325572,0.004236819,0.02293496],"genre_scores_gemma":[0.1295263,0.002643748,0.0728718,0.0005884207,0.00003293641,0.0006757033,0.7690558,0.001187441,0.0234178],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.07843238,"threshold_uncertainty_score":0.1559517,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0653937057674866,"score_gpt":0.2709009281138545,"score_spread":0.2055072223463679,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}