{"id":"W4281717226","doi":"10.1101/2022.05.27.493684","title":"New Vista into Origins of Viruses from a Prototypic ssDNA Phage","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"","keywords":"Biology; Capsid; Phylogenetic tree; Viral evolution; Evolutionary biology; Genome; Bacteriophage; Virus classification; Phylogenetics; Most recent common ancestor; Human virome; Genetics; Bacterial virus; Virus; Virology; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002441744,0.0002345595,0.0002008344,0.0004111748,0.0003673986,0.0008920603,0.0001759334,0.0006661428,0.001205255],"category_scores_gemma":[0.0003337704,0.0001672544,0.0002006482,0.0002426262,0.0005074157,0.0007811334,0.0004610256,0.0007023709,0.0003313011],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000338277,"about_ca_system_score_gemma":0.0001824917,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003146074,"about_ca_topic_score_gemma":0.0003555252,"domain_scores_codex":[0.9998721,0.00002018833,0.000005750743,0.00004273592,0.00003264824,0.00002658655],"domain_scores_gemma":[0.9997787,0.00006713923,0.00003619025,0.00003918446,0.00002190706,0.00005679706],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003451201,0.00004390561,0.01801966,0.0001093681,0.00001705437,0.0006649,0.0004516939,0.0003269168,0.9650172,0.004405825,0.0002452783,0.01035311],"study_design_scores_gemma":[0.00003787398,0.0007276708,0.2046381,0.0001802902,0.00006785274,0.008407218,0.00231525,0.007061213,0.6900237,0.02398892,0.06245689,0.00009501335],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9909829,0.002209848,0.004199923,0.0001645215,0.0000347222,0.000006468912,0.0001144023,0.00004454317,0.002242649],"genre_scores_gemma":[0.9935837,0.0006909478,0.004023213,0.00007765515,0.00003105221,0.000006170839,0.0002643811,0.00002401566,0.001298819],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001205255,"threshold_uncertainty_score":0.004032016,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01261578846762287,"score_gpt":0.2362486545820908,"score_spread":0.2236328661144679,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}