{"id":"W4281723872","doi":"10.1002/vms3.851","title":"Phylogenetic analysis of porcine circovirus 3 circulating in Canadian pigs","year":2022,"lang":"en","type":"article","venue":"Veterinary Medicine and Science","topic":"Animal Virus Infections Studies","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Shared Health; Université de Montréal; University of Guelph; Simon Fraser University; University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Porcine circovirus; Phylogenetic tree; Antigenicity; Circovirus; Capsid; Biology; Virology; Pathogenicity; Genetic diversity; Phylogenetic relationship; Genetics; Gene; Microbiology; Virus; Antibody; Medicine; Population","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006882655,0.00006051999,0.0001749767,0.0002343029,0.0005074606,0.000005184852,0.0001632568,0.00001007326,0.0004041158],"category_scores_gemma":[0.0001024059,0.00002721873,0.00002349647,0.003656525,0.0003715112,0.00004622572,0.0001399745,0.00006651679,4.425931e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007112964,"about_ca_system_score_gemma":0.00003130815,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.2337064,"about_ca_topic_score_gemma":0.08084603,"domain_scores_codex":[0.9991221,0.00004118659,0.0001640899,0.000221786,0.0002173837,0.0002334753],"domain_scores_gemma":[0.9996932,0.00008361103,0.00005035994,0.00004213203,0.00003093914,0.00009979922],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000006211144,0.00001439711,0.4853406,0.00000255371,0.00001304959,0.00002670253,0.0004989651,0.000130738,0.5063021,0.0001060598,0.00001181,0.007546847],"study_design_scores_gemma":[0.00005076343,0.0008816783,0.9947067,0.000005337365,0.00002968796,0.00002508614,0.001485065,0.001237491,0.000027928,0.00003372019,0.001455457,0.00006100764],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973137,0.0003991564,5.449033e-7,0.0004720646,0.00005042258,0.00006051007,0.00001510758,0.000006196787,0.001682254],"genre_scores_gemma":[0.9996931,0.00003397849,0.00001213989,0.0002106737,0.00002159368,0.000009786649,0.000003964619,2.68424e-7,0.00001452047],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5093662,"threshold_uncertainty_score":0.9359261,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07601321106860597,"score_gpt":0.2936502204139367,"score_spread":0.2176370093453307,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}