{"id":"W4281723872","doi":"10.1002/vms3.851","title":"Phylogenetic analysis of porcine circovirus 3 circulating in Canadian pigs","year":2022,"lang":"en","type":"article","venue":"Veterinary Medicine and Science","topic":"Animal Virus Infections Studies","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Shared Health; Université de Montréal; University of Guelph; Simon Fraser University; University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Porcine circovirus; Phylogenetic tree; Antigenicity; Circovirus; Capsid; Biology; Virology; Pathogenicity; Genetic diversity; Phylogenetic relationship; Genetics; Gene; Microbiology; Virus; Antibody; Medicine; Population","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003703552,0.0003064011,0.0002307856,0.0017263,0.002098891,0.0006365785,0.0003261176,0.0002978903,0.001055239],"category_scores_gemma":[0.0006517239,0.0001668119,0.0003259075,0.002056262,0.000458255,0.0001093984,0.0003299598,0.0003692919,0.0001811099],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00692215,"about_ca_system_score_gemma":0.008682402,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.8969143,"about_ca_topic_score_gemma":0.9464805,"domain_scores_codex":[0.9996204,0.0000200808,0.00001232874,0.00008835316,0.0001299959,0.0001287683],"domain_scores_gemma":[0.9993185,0.00005420985,0.0000901104,0.00001906658,0.0003739559,0.0001442687],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005721115,0.0000539169,0.9259876,0.0001182189,0.00009404001,0.0006057703,0.001851874,0.000833744,0.05029443,0.0002595971,0.0008477365,0.01848084],"study_design_scores_gemma":[0.000006190542,0.00009217131,0.993463,0.00002679945,0.00003178549,0.0003686491,0.0009045552,0.0006373865,0.001415491,0.00002822914,0.00301467,0.0000110784],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9956327,0.0003097477,0.0003066214,0.00006421339,0.000006669043,0.00002999137,0.00121489,0.00001188569,0.002423252],"genre_scores_gemma":[0.9942691,0.0003349599,0.001553097,0.00006813675,0.000004127714,0.00001492688,0.002712942,0.000007604021,0.001035106],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1030857,"threshold_uncertainty_score":0.2073855,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07601321106860597,"score_gpt":0.2936502204139367,"score_spread":0.2176370093453307,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}