{"id":"W4281731829","doi":"10.1101/2022.05.27.493806","title":"Genomic and environmental factors shape gill microbiome activity in an Amazonian teleost holobiont","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Environmental DNA in Biodiversity Studies","field":"Environmental Science","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université du Québec; Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; National Geographic Society; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Mitacs; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Fundação de Amparo à Pesquisa do Estado do Amazonas","keywords":"Biology; Microbiome; Bacterioplankton; Holobiont; Host (biology); Ecology; Evolutionary biology; Genetics; Bacteria; Symbiosis","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001548751,0.0002132809,0.0002738188,0.0004650198,0.0003928115,0.0004536678,0.000185263,0.0002399395,0.0009157704],"category_scores_gemma":[0.0004107675,0.0001798427,0.0002378502,0.0004392616,0.0004049366,0.0002278796,0.0004916249,0.0001741671,0.0001094469],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003544809,"about_ca_system_score_gemma":0.0003213017,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01570014,"about_ca_topic_score_gemma":0.02361004,"domain_scores_codex":[0.9998327,0.00001904708,0.000007857582,0.00008340119,0.00002376809,0.00003317767],"domain_scores_gemma":[0.9998152,0.00002863873,0.00007060843,0.00001393982,0.00003991527,0.00003174602],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002493206,0.00002621637,0.7061275,0.00005790364,0.00007072427,0.000137045,0.001410288,0.0002291921,0.2871391,0.00005814774,0.00005948043,0.004435012],"study_design_scores_gemma":[0.000001288786,0.00002610069,0.9981572,0.000002394365,0.0000116168,0.00004837574,0.0004490207,0.0002408374,0.000946508,0.00001662275,0.00009740319,0.000002512932],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9997211,0.00002517826,0.00008166373,0.000006094552,3.870375e-7,0.000001310981,0.00009819668,0.000001686948,0.0000643423],"genre_scores_gemma":[0.9995599,0.00001829048,0.0001761413,0.000009645201,8.725101e-7,0.000003540598,0.0001476482,0.000002709335,0.00008130828],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01570014,"threshold_uncertainty_score":0.03121752,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01268926229574046,"score_gpt":0.1922176417501987,"score_spread":0.1795283794544582,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}