{"id":"W4281734550","doi":"10.1016/j.xpro.2022.101434","title":"Rapid immunoprecipitation mass spectrometry of endogenous protein (RIME) to identify chromatin-interactome in prostate cancer cells","year":2022,"lang":"en","type":"article","venue":"STAR Protocols","topic":"Prostate Cancer Treatment and Research","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research","keywords":"DU145; Interactome; LNCaP; Immunoprecipitation; Hard rime; Prostate cancer; Mass spectrometry; Cancer research; Chromatin immunoprecipitation; Endogeny; Chemistry; Cancer; Computational biology; Biology; Medicine; Internal medicine; Chromatography; Biochemistry; Gene; Gene expression; Physics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00119779,0.00123465,0.001008473,0.00178389,0.001075527,0.001039279,0.001104642,0.0007805497,0.006873696],"category_scores_gemma":[0.0008038979,0.0007532171,0.0009817876,0.001497341,0.0004095292,0.0006615224,0.001151728,0.003010505,0.007725808],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005596339,"about_ca_system_score_gemma":0.0006346097,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008636251,"about_ca_topic_score_gemma":0.003128825,"domain_scores_codex":[0.998697,0.0001386783,0.00008485438,0.0003877342,0.0005430491,0.0001486851],"domain_scores_gemma":[0.9995942,0.00007529287,0.00004646966,0.0001035575,0.0001307922,0.0000496665],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001435293,0.00005944945,0.0003739829,0.0002543941,0.00004510103,0.00007997151,0.00005803256,0.0001000701,0.9896746,0.0005983415,0.002874638,0.005737809],"study_design_scores_gemma":[0.00005301883,0.0002172595,0.008520987,0.00003970859,0.00007820744,0.0005413106,0.00005682045,0.002299525,0.9408337,0.0005167861,0.04679379,0.00004883848],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"protocol","genre_scores_codex":[0.2167557,0.01441375,0.6666602,0.001802909,0.001335044,0.002710638,0.05134323,0.01412871,0.03084973],"genre_scores_gemma":[0.1867469,0.01097518,0.6425103,0.001934185,0.0003281383,0.005482463,0.08305509,0.003168535,0.06579927],"genre_candidate":"protocol","genre_consensus":null,"teacher_disagreement_score":0.006873696,"threshold_uncertainty_score":0.02299482,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04623498943077752,"score_gpt":0.377891734602171,"score_spread":0.3316567451713934,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}