{"id":"W4281762653","doi":"10.1101/2022.06.02.494628","title":"Genomic epidemiology revealed the emergence and worldwide dissemination of ST383 carbapenem-resistant hypervirulent <i>Klebsiella pneumoniae</i> and hospital acquired infections of ST196 <i>Klebsiella quasipneumoniae</i> in Qatar","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Medical Research Council; National Institutes of Health; Simon Fraser University; Monash University; University of Pittsburgh; Hamad Medical Corporation","keywords":"Klebsiella pneumoniae; Virulence; Biology; Plasmid; Microbiology; Aerobactin; Klebsiella; Whole genome sequencing; Molecular epidemiology; Genome; Gene; Virology; Genetics; Enterobacteriaceae; Genotype; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002258061,0.0002915762,0.000162587,0.000502879,0.0003647615,0.0003419502,0.0001527507,0.0003402509,0.001667453],"category_scores_gemma":[0.0002944135,0.0001558759,0.0002443588,0.0006935559,0.0002126565,0.0001533575,0.0002137141,0.0002965279,0.0001853641],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004675631,"about_ca_system_score_gemma":0.0003006152,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01745082,"about_ca_topic_score_gemma":0.01338765,"domain_scores_codex":[0.9998333,0.00002934739,0.00001059443,0.00005333547,0.00002757942,0.00004586265],"domain_scores_gemma":[0.9997813,0.0000263986,0.00009610382,0.00001388842,0.00004907829,0.00003326807],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004825866,0.00006702304,0.8301839,0.00008146491,0.00006288047,0.001443288,0.001903127,0.0005375857,0.1553062,0.000172209,0.0003265726,0.009433141],"study_design_scores_gemma":[0.000006431551,0.0001172643,0.996922,0.000008146355,0.00001323094,0.0005984213,0.0004458089,0.0003035354,0.001233804,0.00002211256,0.0003260337,0.000003342157],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9993464,0.00003853301,0.0001434068,0.00002631642,0.000001139064,0.000007630922,0.0002763711,0.000003182319,0.0001568368],"genre_scores_gemma":[0.9991788,0.00002857466,0.0002350462,0.00002507993,0.000002294218,0.000002722078,0.0003971685,9.16403e-7,0.0001293746],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01745082,"threshold_uncertainty_score":0.03469849,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008775618805520675,"score_gpt":0.2390091387032431,"score_spread":0.2302335198977224,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}