{"id":"W4281778678","doi":"10.1093/plphys/kiac269","title":"Multi-omic analysis shows<i>REVEILLE</i>clock genes are involved in carbohydrate metabolism and proteasome function","year":2022,"lang":"en","type":"article","venue":"PLANT PHYSIOLOGY","topic":"Photosynthetic Processes and Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Alberta Innovates; Natural Sciences and Engineering Research Council of Canada; Mitacs; University of Alberta","keywords":"Biology; Arabidopsis; Arabidopsis thaliana; Circadian clock; Transcriptome; Proteasome; Proteomics; Circadian rhythm; Metabolomics; Proteome; Cell biology; Gene; Biochemistry; Mutant; Bioinformatics; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004299533,0.0009346548,0.0007742377,0.001843631,0.0006374533,0.001579145,0.0003984774,0.0005466648,0.001890026],"category_scores_gemma":[0.0003100729,0.0002669712,0.001184191,0.001963113,0.0002824118,0.0007225362,0.0006817832,0.0009504456,0.001313696],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004912512,"about_ca_system_score_gemma":0.0003921302,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001570581,"about_ca_topic_score_gemma":0.003199273,"domain_scores_codex":[0.999548,0.00002548712,0.00003265827,0.0001538278,0.0001832072,0.00005678796],"domain_scores_gemma":[0.999699,0.00003494975,0.0001220128,0.00004296413,0.00006022596,0.00004095609],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002177446,0.00003835822,0.009017789,0.0003838572,0.00019358,0.0004160742,0.00006814395,0.000205358,0.9711829,0.0004767902,0.002209746,0.01558955],"study_design_scores_gemma":[0.0000326589,0.0002618638,0.4159172,0.0001773335,0.0005114424,0.003241117,0.000426581,0.005861016,0.4671863,0.002461549,0.1037973,0.0001255528],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7914428,0.02485064,0.0630138,0.002381601,0.0004803596,0.0001625698,0.09888282,0.004356159,0.01442925],"genre_scores_gemma":[0.7641219,0.01074969,0.08394893,0.001885502,0.0002045379,0.0001939687,0.1274251,0.0009003352,0.01057003],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001890026,"threshold_uncertainty_score":0.006322801,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.010442008698401,"score_gpt":0.2095299537558011,"score_spread":0.1990879450574,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}