{"id":"W4281876890","doi":"10.1186/s42523-022-00189-6","title":"Expressions of resistome is linked to the key functions and stability of active rumen microbiome","year":2022,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Pharmaceutical and Antibiotic Environmental Impacts","field":"Environmental Science","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture Food and Rural Development; Agriculture and Agri-Food Canada; University of Alberta","funders":"Agricultural Science and Technology Innovation Program; Natural Sciences and Engineering Research Council of Canada; Alberta Agriculture and Forestry; Ministry of Agriculture, Forestry and Fisheries; Genome Alberta; Chinese Academy of Agricultural Sciences; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada","keywords":"Resistome; Metagenomics; Microbiome; Biology; Rumen; Ruminococcus; Microbiology; Microbial ecology; Bacteria; Genetics; Food science; Gene; Antibiotic resistance; Fermentation","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000220918,0.0001307203,0.0001797427,0.00004539697,0.0002859298,0.000008035933,0.0002376901,0.00003256492,0.005139602],"category_scores_gemma":[0.00001632994,0.00009919124,0.00007293192,0.0003959899,0.0004740249,0.0001032306,0.001119602,0.0001579391,0.00009836521],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001288077,"about_ca_system_score_gemma":0.00001077839,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002483618,"about_ca_topic_score_gemma":0.0000147843,"domain_scores_codex":[0.9989152,0.0001012343,0.0002518991,0.0003067564,0.0001696542,0.0002552472],"domain_scores_gemma":[0.9994343,0.00006647018,0.00009994259,0.0002636185,0.000004857678,0.0001307929],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001520826,0.0003017206,0.003145096,0.00001259678,0.00001975878,0.000001216524,0.001520836,0.00000851239,0.9922597,0.00000627014,0.002145169,0.0004270292],"study_design_scores_gemma":[0.000403892,0.0005226302,0.2792176,0.00001609453,0.00004594851,0.0000239167,0.001382088,0.00001735847,0.6726103,0.0000415875,0.04552521,0.0001933085],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9954765,0.00005987443,0.000008100552,0.002178401,0.00005255482,0.0003103388,0.0009446903,0.00001074314,0.0009588018],"genre_scores_gemma":[0.9987372,0.00001146463,0.0002034704,0.0005673653,0.000008814819,0.000008652816,0.00001158718,0.00001096714,0.0004404895],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3196494,"threshold_uncertainty_score":0.9957699,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02559680171600858,"score_gpt":0.2626001475579606,"score_spread":0.237003345841952,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}