{"id":"W4281876890","doi":"10.1186/s42523-022-00189-6","title":"Expressions of resistome is linked to the key functions and stability of active rumen microbiome","year":2022,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Pharmaceutical and Antibiotic Environmental Impacts","field":"Environmental Science","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture Food and Rural Development; Agriculture and Agri-Food Canada; University of Alberta","funders":"Agricultural Science and Technology Innovation Program; Natural Sciences and Engineering Research Council of Canada; Alberta Agriculture and Forestry; Ministry of Agriculture, Forestry and Fisheries; Genome Alberta; Chinese Academy of Agricultural Sciences; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada","keywords":"Resistome; Metagenomics; Microbiome; Biology; Rumen; Ruminococcus; Microbiology; Microbial ecology; Bacteria; Genetics; Food science; Gene; Antibiotic resistance; Fermentation","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003305499,0.0003019912,0.0003495924,0.0007524485,0.0002254529,0.0007519578,0.0001042491,0.0003043912,0.001181925],"category_scores_gemma":[0.0004396115,0.0001304768,0.0002175836,0.0005698231,0.000303642,0.000303657,0.0004483156,0.000304337,0.0002337803],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001894876,"about_ca_system_score_gemma":0.0001318223,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006444498,"about_ca_topic_score_gemma":0.0006182504,"domain_scores_codex":[0.9997283,0.00003255618,0.00002136977,0.00009702088,0.00006102002,0.00005978765],"domain_scores_gemma":[0.9993907,0.0001013706,0.0003185803,0.00002553317,0.00008136797,0.00008239764],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005751812,0.00005451476,0.2403192,0.0001853849,0.0001079915,0.00009542469,0.0002574002,0.000153584,0.7505488,0.00008241073,0.0000785258,0.007541623],"study_design_scores_gemma":[0.000003842576,0.0001543057,0.9775868,0.00001757976,0.00005040196,0.0002383256,0.0002707355,0.0004631988,0.02043987,0.0001055351,0.0006604461,0.000008888418],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981909,0.0004269652,0.0005362678,0.00002298715,0.000003302798,0.0000046184,0.000531377,0.000009789544,0.000273858],"genre_scores_gemma":[0.997932,0.0002188037,0.0007584422,0.00002438762,0.000007555127,0.00001181495,0.0007698292,0.000005594503,0.0002714189],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001181925,"threshold_uncertainty_score":0.003953934,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02559680171600858,"score_gpt":0.2626001475579606,"score_spread":0.237003345841952,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}