{"id":"W4281902165","doi":"10.1128/spectrum.02337-21","title":"Clinical and Genomic Investigation of an International Ceftriaxone- and Azithromycin-Resistant Shigella sonnei Cluster among Men Who Have Sex with Men, Montréal, Canada 2017–2019","year":2022,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institut National de Santé Publique du Québec; Centre Intégré Universitaire de Santé et de Services Sociaux du Centre-Sud-de-l'Île-de-Montréal; Université de Montréal; Hôpital Charles-Le Moyne; Centre Hospitalier de l’Université de Montréal","funders":"","keywords":"Ceftriaxone; Azithromycin; Shigella sonnei; Men who have sex with men; Shigella; Demography; Male Homosexuality; Biology; Microbiology; Virology; Antibiotics; Genetics; Syphilis; Sociology; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004444868,0.000165134,0.0002719164,0.00004740533,0.0001880625,0.00001561469,0.0002178309,0.00009069293,0.00001755394],"category_scores_gemma":[0.00003293541,0.0001454954,0.00002588622,0.00004117297,0.0005765972,0.000007696658,0.0005644567,0.0002110563,2.497255e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006376815,"about_ca_system_score_gemma":0.0002770915,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.05008114,"about_ca_topic_score_gemma":0.283619,"domain_scores_codex":[0.9985651,0.0003023611,0.0002951552,0.0004914142,0.00008421617,0.0002617779],"domain_scores_gemma":[0.9993977,0.00004383951,0.0001575742,0.00025773,0.00004612132,0.00009701533],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005673473,0.00003399342,0.3546259,0.00001390243,0.0003441682,0.00001543294,0.0001448766,0.00005998892,0.6232678,0.00002190359,0.02084023,0.00006452979],"study_design_scores_gemma":[0.004717975,0.003248682,0.8900356,0.00001928962,0.00009476535,0.0002001651,0.002705736,0.001680799,0.05773384,0.0000847444,0.0388119,0.0006664734],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963506,0.001074592,0.00001445706,0.001211448,0.00004802002,0.000300729,0.0002192429,0.000004866512,0.0007760747],"genre_scores_gemma":[0.9967572,0.0005057825,0.000258431,0.000271558,0.0001072479,0.00002676909,0.000256369,0.00001850646,0.001798152],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5655339,"threshold_uncertainty_score":0.9562445,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008070962175222376,"score_gpt":0.2414302344950628,"score_spread":0.2333592723198405,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}