{"id":"W4281902165","doi":"10.1128/spectrum.02337-21","title":"Clinical and Genomic Investigation of an International Ceftriaxone- and Azithromycin-Resistant Shigella sonnei Cluster among Men Who Have Sex with Men, Montréal, Canada 2017–2019","year":2022,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institut National de Santé Publique du Québec; Centre Intégré Universitaire de Santé et de Services Sociaux du Centre-Sud-de-l'Île-de-Montréal; Université de Montréal; Hôpital Charles-Le Moyne; Centre Hospitalier de l’Université de Montréal","funders":"","keywords":"Ceftriaxone; Azithromycin; Shigella sonnei; Men who have sex with men; Shigella; Demography; Male Homosexuality; Biology; Microbiology; Virology; Antibiotics; Genetics; Syphilis; Sociology; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002050487,0.000412522,0.000207514,0.001152298,0.001795855,0.0006636268,0.000589991,0.0004712428,0.003030747],"category_scores_gemma":[0.0008096228,0.0003370659,0.000222236,0.001124415,0.0009198349,0.0001776257,0.0005412911,0.0005130573,0.0002732122],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.005263908,"about_ca_system_score_gemma":0.006115247,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.8516284,"about_ca_topic_score_gemma":0.8778346,"domain_scores_codex":[0.9995616,0.00003107795,0.00001682143,0.00009922804,0.0001452147,0.00014601],"domain_scores_gemma":[0.9992642,0.00002977451,0.00007192673,0.00001524807,0.0003957231,0.000223073],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002033345,0.0001420915,0.9694643,0.00006547366,0.00004902708,0.006764624,0.002740453,0.0001209499,0.008753545,0.0001826011,0.002877908,0.008635529],"study_design_scores_gemma":[0.00001310008,0.0001704214,0.9916203,0.0000283037,0.00002513493,0.002036426,0.002421473,0.0001324287,0.0005132967,0.00001596887,0.003012494,0.00001069684],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9903195,0.000684876,0.0002555628,0.0007238732,0.00003248716,0.0001607257,0.002213926,0.00001618982,0.005592925],"genre_scores_gemma":[0.9963732,0.0003454337,0.0002036629,0.0002509881,0.00001848283,0.00001647482,0.0006751413,0.00000707629,0.002109354],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1483716,"threshold_uncertainty_score":0.2984907,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008070962175222376,"score_gpt":0.2414302344950628,"score_spread":0.2333592723198405,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}