{"id":"W4281991263","doi":"10.1186/s40643-022-00548-w","title":"Genome and transcriptome analysis of rock-dissolving Pseudomonas sp. NLX-4 strain","year":2022,"lang":"en","type":"article","venue":"Bioresources and Bioprocessing","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"Lakehead University; University of Victoria","funders":"Priority Academic Program Development of Jiangsu Higher Education Institutions; Ontario Trillium Foundation; Jiangsu Agricultural Science and Technology Innovation Fund","keywords":"Dissolution; Silicate; Strain (injury); Weathering; Transcriptome; Pseudomonas; Chemistry; Gene; Bacteria; Environmental chemistry; Biology; Biochemistry; Gene expression; Organic chemistry; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001784686,0.0001455479,0.0002442734,0.0001404527,0.000346848,0.00003560786,0.0001179941,0.0000486864,0.00001821974],"category_scores_gemma":[0.000007831166,0.0001350742,0.00008869488,0.0002911997,0.0000932424,0.000001182584,0.0001929843,0.00005800917,6.764773e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000005596214,"about_ca_system_score_gemma":0.0000181025,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003718977,"about_ca_topic_score_gemma":0.00001619965,"domain_scores_codex":[0.9990969,0.00002773073,0.0002141255,0.0003456756,0.0001222261,0.0001932988],"domain_scores_gemma":[0.9996538,0.000008288345,0.0001120213,0.0001291499,0.00003275698,0.000063944],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003966253,0.00002848106,0.02709429,0.00004046381,0.000363282,0.000001399335,0.0009044983,0.0004875939,0.9684364,0.00001046395,0.000003156081,0.002590293],"study_design_scores_gemma":[0.00172291,0.001305525,0.8721707,0.00002973818,0.002159416,0.00007110991,0.01496119,0.00447275,0.05244367,0.0002020998,0.04917271,0.001288219],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9805748,0.01876335,0.000188343,0.00008020557,0.00002455197,0.00006938833,0.0001887955,0.000003444135,0.0001071072],"genre_scores_gemma":[0.9989448,0.0004623934,0.0002971196,0.00008055473,0.00005290544,0.000009357802,0.00005308915,0.00001306948,0.00008669337],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9159927,"threshold_uncertainty_score":0.5508168,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01032053995921942,"score_gpt":0.2232313999692748,"score_spread":0.2129108600100554,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}