{"id":"W4281991263","doi":"10.1186/s40643-022-00548-w","title":"Genome and transcriptome analysis of rock-dissolving Pseudomonas sp. NLX-4 strain","year":2022,"lang":"en","type":"article","venue":"Bioresources and Bioprocessing","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"Lakehead University; University of Victoria","funders":"Priority Academic Program Development of Jiangsu Higher Education Institutions; Ontario Trillium Foundation; Jiangsu Agricultural Science and Technology Innovation Fund","keywords":"Dissolution; Silicate; Strain (injury); Weathering; Transcriptome; Pseudomonas; Chemistry; Gene; Bacteria; Environmental chemistry; Biology; Biochemistry; Gene expression; Organic chemistry; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001717102,0.000483933,0.0007432395,0.0006148653,0.00044191,0.0004862065,0.000181346,0.0003920872,0.0007255172],"category_scores_gemma":[0.00025762,0.0001641211,0.0008040793,0.001218178,0.0002118502,0.0003617409,0.0004093079,0.0007672931,0.0003807599],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002575783,"about_ca_system_score_gemma":0.00055001,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001895592,"about_ca_topic_score_gemma":0.001593251,"domain_scores_codex":[0.999769,0.00001780265,0.00001669963,0.00008162179,0.00006784182,0.00004706531],"domain_scores_gemma":[0.9998406,0.00003981083,0.00004013745,0.00001180222,0.000043177,0.00002437456],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001807162,0.00006466559,0.002672869,0.000232743,0.00002093555,0.0001806128,0.0001255886,0.0002712553,0.9905909,0.00006519963,0.000183123,0.005411442],"study_design_scores_gemma":[0.00007056878,0.001212048,0.4949628,0.0001656734,0.000491142,0.00233205,0.002003876,0.01093805,0.4655333,0.000862929,0.02126928,0.0001582274],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9588456,0.002352244,0.006152667,0.0004263777,0.00007996797,0.0001043416,0.02934776,0.000169339,0.002521672],"genre_scores_gemma":[0.9068995,0.003075748,0.02155997,0.0004110959,0.00006461285,0.0004390059,0.06152773,0.000171655,0.005850649],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001895592,"threshold_uncertainty_score":0.003769159,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01032053995921942,"score_gpt":0.2232313999692748,"score_spread":0.2129108600100554,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}