{"id":"W4282041571","doi":"10.1101/2022.05.26.493643","title":"Peptide and protein alphavirus antigens for broad spectrum vaccine design","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Mosquito-borne diseases and control","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity","funders":"Los Alamos National Laboratory; Laboratory Directed Research and Development; National Institutes of Health","keywords":"Alphavirus; Virology; Venezuelan equine encephalitis virus; Chikungunya; Biology; Togaviridae; Antibody; Alphavirus infection; Antigen; Virus; Sindbis virus; RNA; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002858633,0.0004304055,0.0001850457,0.0002148392,0.0001107041,0.0004036947,0.0002188422,0.0003021873,0.002044047],"category_scores_gemma":[0.0001664647,0.0001587574,0.0001519933,0.0001449811,0.0001485526,0.0003177419,0.0002348291,0.0005773608,0.0007169313],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002200406,"about_ca_system_score_gemma":0.0002547476,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001457555,"about_ca_topic_score_gemma":0.0001956366,"domain_scores_codex":[0.9999262,0.00001761504,0.000005128194,0.00001460717,0.00001976221,0.00001660808],"domain_scores_gemma":[0.9999388,0.000009118426,0.00001251548,0.000005703912,0.00001607697,0.00001768501],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001386404,0.0001349617,0.0003910131,0.0001297537,0.00001070397,0.00009067087,0.00002316721,0.004492679,0.9685448,0.002611084,0.0004976969,0.02293477],"study_design_scores_gemma":[0.0003009771,0.002628358,0.002259491,0.00006813162,0.00004811511,0.0005832424,0.00009257323,0.02102702,0.9239544,0.005834586,0.04318461,0.00001843808],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8350823,0.006906684,0.1463529,0.0006743242,0.0002495954,0.0006603584,0.0004832381,0.0002616109,0.009329084],"genre_scores_gemma":[0.9068404,0.003104379,0.08276967,0.0002475824,0.00006659548,0.0002067602,0.0007814708,0.00003804555,0.005945213],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002044047,"threshold_uncertainty_score":0.006838024,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01793134745986391,"score_gpt":0.2453122696293217,"score_spread":0.2273809221694578,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}