{"id":"W4282831429","doi":"10.21203/rs.3.rs-1743613/v1","title":"Source attribution of campylobacteriosis in Australia circa 2018","year":2022,"lang":"en","type":"preprint","venue":"Research Square","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity; Agriculture and Agri-Food Canada","funders":"National Health and Medical Research Council; Agrifutures Australia; Medical Research Council; NSW Ministry of Health; Queensland Health; Meat and Livestock Australia; University of Queensland; Department of Health, State Government of Victoria; University of Melbourne; Australian Government; Massey University; Hunter New England Local Health District; Australian National University; U.S. Department of Health and Human Services; University of Florida; Eli Lilly and Company","keywords":"Campylobacter; Campylobacteriosis; Livestock; Outbreak; Biology; Veterinary medicine; Multilocus sequence typing; Campylobacter jejuni; Genotyping; Feces; Cryptosporidium; Microbiology; Ecology; Medicine; Genetics; Genotype; Virology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002074641,0.0003880948,0.0002825971,0.001655264,0.0006564592,0.00109716,0.0004768392,0.0004098496,0.008608411],"category_scores_gemma":[0.01166049,0.0003495789,0.0005302585,0.001512081,0.0004516911,0.0005544833,0.001260669,0.0006438728,0.001259407],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001649039,"about_ca_system_score_gemma":0.00248775,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.1179561,"about_ca_topic_score_gemma":0.0581528,"domain_scores_codex":[0.9985943,0.000365413,0.0001316303,0.0002620838,0.0004543313,0.0001920949],"domain_scores_gemma":[0.9933618,0.000750654,0.002330509,0.0006058976,0.002303318,0.0006477507],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002710003,0.0001088141,0.9076631,0.0005967704,0.0003030764,0.0007049642,0.002226309,0.001287017,0.001639218,0.001353509,0.02562952,0.05821662],"study_design_scores_gemma":[0.00001892059,0.00008602695,0.9601066,0.0004870541,0.00008248314,0.0006361831,0.0007381412,0.006082089,0.0003316987,0.0008619201,0.03054257,0.00002637683],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9168386,0.005926234,0.007845464,0.002341052,0.0004999866,0.0005357931,0.02460045,0.0006731325,0.04073911],"genre_scores_gemma":[0.9749858,0.002282307,0.002918445,0.0003595071,0.00008939397,0.0001665395,0.01111795,0.0001437537,0.00793638],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1179561,"threshold_uncertainty_score":0.234539,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1877963979928466,"score_gpt":0.4042208230033849,"score_spread":0.2164244250105384,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}