{"id":"W4282838644","doi":"10.1128/msphere.00156-22","title":"Reconstitution of Mycobacterium marinum Nonhomologous DNA End Joining Pathway in <i>Leishmania</i>","year":2022,"lang":"en","type":"article","venue":"mSphere","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research","keywords":"Ku80; Ku70; Biology; Non-homologous end joining; DNA ligase; DNA repair; Cell biology; DNA; Molecular biology; Genetics; Gene; DNA-binding protein; Transcription factor","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002005839,0.0004430003,0.0002231356,0.0002048338,0.0003072069,0.0004377473,0.0005724505,0.0005584642,0.001502451],"category_scores_gemma":[0.0001237007,0.0002832132,0.0002981705,0.000303767,0.0002176195,0.0002898219,0.0004586713,0.001127304,0.001206229],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005039654,"about_ca_system_score_gemma":0.0002522668,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001118583,"about_ca_topic_score_gemma":0.001215736,"domain_scores_codex":[0.9998161,0.00003528444,0.00001959094,0.00004015301,0.00005307259,0.00003593023],"domain_scores_gemma":[0.9998775,0.00001323442,0.00004013518,0.00002792801,0.00001179152,0.00002944687],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007991819,0.00006241142,0.00008514957,0.00005113135,0.000005693361,0.00003502987,0.00003571978,0.00009788103,0.9983671,0.0004960251,0.00007781253,0.0006061778],"study_design_scores_gemma":[0.00002662234,0.0002447939,0.001690515,0.00001364745,0.00001411377,0.0001142047,0.00003877807,0.000898441,0.9879653,0.0001296171,0.00885548,0.000008459759],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9848216,0.001391808,0.007441735,0.000266159,0.0001263094,0.0001241896,0.001914541,0.0003501148,0.003563594],"genre_scores_gemma":[0.9822792,0.0007093701,0.005079471,0.00008089112,0.00001578672,0.00008871444,0.003594472,0.0001113725,0.008040578],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001502451,"threshold_uncertainty_score":0.005026221,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007692290524053368,"score_gpt":0.202797867801141,"score_spread":0.1951055772770876,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}