{"id":"W4282915116","doi":"10.3390/microorganisms10051070","title":"Whole-Genome Sequencing Reveals Multiple Subpopulations of Dominant and Persistent Lineage I Isolates of Listeria monocytogenes in Two Meat Processing Facilities during 2011–2015","year":2022,"lang":"en","type":"article","venue":"Microorganisms","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"","keywords":"Pulsed-field gel electrophoresis; Listeria monocytogenes; Biology; Serotype; Foodborne pathogen; Virulence; Population; Lineage (genetic); Multilocus sequence typing; Microbiology; Genome; Pathogen; Bacteriocin; Genetics; Genotype; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002399212,0.0003294183,0.0002079636,0.0008842453,0.000774259,0.0006261196,0.0002711629,0.0004086087,0.0003293485],"category_scores_gemma":[0.0004515783,0.0002614352,0.0002952081,0.0008425601,0.000411337,0.0001755315,0.0005587565,0.000378867,0.00008914696],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008903684,"about_ca_system_score_gemma":0.0007510053,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.05267237,"about_ca_topic_score_gemma":0.1038511,"domain_scores_codex":[0.9997163,0.00001954468,0.00002237998,0.00009633045,0.00007137533,0.00007392254],"domain_scores_gemma":[0.99964,0.00003772952,0.0001278921,0.0000180656,0.0001068507,0.00006945717],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003038193,0.00007225512,0.9012542,0.00006407929,0.00005332359,0.001521193,0.003964274,0.0003338746,0.08570011,0.00004060387,0.0002614489,0.006430989],"study_design_scores_gemma":[0.000002564886,0.00005642837,0.9952107,0.00001232707,0.0000217485,0.0002985795,0.001407273,0.000200268,0.002415054,0.000005363883,0.0003642402,0.000005527779],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994992,0.00003915987,0.00006145444,0.00001276439,0.000001065906,0.00000502357,0.0002693007,0.000002839779,0.0001090963],"genre_scores_gemma":[0.9981105,0.00008957701,0.0003279801,0.00004026059,0.0000025845,0.00001041705,0.001073756,0.000003529613,0.0003413873],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05267237,"threshold_uncertainty_score":0.1047316,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04843330081872857,"score_gpt":0.2927153345663707,"score_spread":0.2442820337476421,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}