{"id":"W4282915116","doi":"10.3390/microorganisms10051070","title":"Whole-Genome Sequencing Reveals Multiple Subpopulations of Dominant and Persistent Lineage I Isolates of Listeria monocytogenes in Two Meat Processing Facilities during 2011–2015","year":2022,"lang":"en","type":"article","venue":"Microorganisms","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"","keywords":"Pulsed-field gel electrophoresis; Listeria monocytogenes; Biology; Serotype; Foodborne pathogen; Virulence; Population; Lineage (genetic); Multilocus sequence typing; Microbiology; Genome; Pathogen; Bacteriocin; Genetics; Genotype; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002697306,0.0002031607,0.0003373707,0.0001121721,0.0001821404,0.00001884066,0.0002374601,0.00006510649,0.00003293453],"category_scores_gemma":[0.00003533246,0.0002191318,0.0000972215,0.0001079184,0.0001303746,0.00001440006,0.0006874886,0.0000864434,8.193699e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009981872,"about_ca_system_score_gemma":0.00009294201,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000280087,"about_ca_topic_score_gemma":0.0002023467,"domain_scores_codex":[0.9985394,0.0001173986,0.0005677873,0.0004026706,0.0001175269,0.0002551887],"domain_scores_gemma":[0.9992447,0.00001384143,0.0002589045,0.0003450439,0.00008723117,0.00005022057],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001873182,0.00004244881,0.02656952,0.0002270331,0.00003837334,0.000003367184,0.002127152,0.002098475,0.9686478,0.000002637762,0.000003760055,0.00005208851],"study_design_scores_gemma":[0.001089267,0.0001924954,0.008280392,0.00002950283,0.00003070427,0.00007700804,0.003777902,0.0001536259,0.9856423,0.00001351535,0.0004744185,0.0002389159],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9943061,0.004565842,0.0001595783,0.0000422145,0.00008808742,0.0002950539,0.0005143941,0.000008300357,0.00002037459],"genre_scores_gemma":[0.9972585,0.00006519567,0.001873776,0.00001900656,0.00004199269,0.00002757779,0.0002046597,0.00003603943,0.0004732384],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01828912,"threshold_uncertainty_score":0.8935937,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04843330081872857,"score_gpt":0.2927153345663707,"score_spread":0.2442820337476421,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}