{"id":"W4282917827","doi":"10.1016/j.cimid.2022.101835","title":"Comparative genomic analysis of Canadian Mycoplasma bovis strains isolated from Bison and Cattle","year":2022,"lang":"en","type":"article","venue":"Comparative Immunology Microbiology and Infectious Diseases","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Biology; Genome; Virulence; Genetics; Whole genome sequencing; Genomics; Pathogenicity island; Mycobacterium bovis; Comparative genomics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001797885,0.0004850774,0.0005959788,0.002673199,0.001580397,0.001060239,0.0005396336,0.0004835613,0.001859469],"category_scores_gemma":[0.0006784827,0.0002631138,0.0005418807,0.003388468,0.0006075337,0.0001504974,0.0005171776,0.0008131213,0.0005580652],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002104245,"about_ca_system_score_gemma":0.001911027,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.2687814,"about_ca_topic_score_gemma":0.3434244,"domain_scores_codex":[0.9995617,0.0000199044,0.0000142242,0.0001020206,0.0001119414,0.0001902353],"domain_scores_gemma":[0.9992641,0.0001556759,0.0001049167,0.0000298115,0.0002850033,0.0001604598],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000830875,0.00006710066,0.01176792,0.0001334415,0.00003727843,0.0004393231,0.001130763,0.00008787923,0.9795518,0.0001663084,0.0001732971,0.005614081],"study_design_scores_gemma":[0.00002729029,0.0004303127,0.904223,0.00005199308,0.0001994742,0.001175474,0.00275599,0.0002380961,0.07919472,0.00006415044,0.01161462,0.00002487787],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9901613,0.0009595479,0.0006615111,0.0001075749,0.0000247828,0.00004133045,0.004003286,0.00002078192,0.004019821],"genre_scores_gemma":[0.9800628,0.0008588441,0.002174417,0.0002302437,0.00003891466,0.00004678916,0.01277458,0.00003228416,0.003781029],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7312186,"threshold_uncertainty_score":0.5344337,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0227570256038069,"score_gpt":0.2720350866613928,"score_spread":0.2492780610575859,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}