{"id":"W4282921652","doi":"10.1093/gbe/evac091","title":"Mitochondrial Phylogenomics of <i>Cuscuta</i> (Convolvulaceae) Reveals a Potentially Functional Horizontal Gene Transfer from the Host","year":2022,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Plant Parasitism and Resistance","field":"Agricultural and Biological Sciences","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Cuscuta; Biology; Horizontal gene transfer; Plastid; Phylogenomics; Mitochondrial DNA; Nuclear gene; Phylogenetics; Genome; Gene; Phylogenetic tree; Genetics; Parasitic plant; Convolvulaceae; Evolutionary biology; Host (biology); Botany; Chloroplast; Clade","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001514947,0.0003406271,0.0002481326,0.001518634,0.0005979685,0.0005353489,0.0002217709,0.0003629721,0.001129966],"category_scores_gemma":[0.0002521206,0.0001494816,0.0003000243,0.001343353,0.0002361743,0.0003600318,0.000322113,0.000425275,0.0003205613],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005067299,"about_ca_system_score_gemma":0.0002525322,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005414459,"about_ca_topic_score_gemma":0.007765623,"domain_scores_codex":[0.9998711,0.00001229041,0.000007819213,0.00005860882,0.00002222782,0.0000279624],"domain_scores_gemma":[0.9997556,0.00004029189,0.00009506601,0.00002020978,0.00003940044,0.00004938539],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005340247,0.00004944083,0.1318897,0.0003769969,0.0001934342,0.0004701324,0.001246439,0.0007871119,0.8207346,0.000639883,0.0002138191,0.04286431],"study_design_scores_gemma":[0.000007434901,0.000103033,0.9737908,0.00004059464,0.0001021019,0.0007637191,0.0004916578,0.001786019,0.01445253,0.0002092322,0.008234547,0.00001838344],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962172,0.001271482,0.001080442,0.00005707779,0.000004143678,0.00000673254,0.0006183396,0.00004072752,0.0007038108],"genre_scores_gemma":[0.9945874,0.0004788409,0.001608205,0.00004217134,0.00000519432,0.000006187048,0.002663616,0.00002435935,0.0005839246],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005414459,"threshold_uncertainty_score":0.01076591,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01017438162585611,"score_gpt":0.1780817824453491,"score_spread":0.167907400819493,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}