{"id":"W4282935138","doi":"10.1111/tpj.15851","title":"The evolution of extremely diverged plastomes in Selaginellaceae (lycophyte) is driven by repeat patterns and the underlying <scp>DNA</scp> maintenance machinery","year":2022,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Photosynthetic Processes and Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University","funders":"Natural Science Foundation of Beijing Municipality; National Natural Science Foundation of China","keywords":"Chloroplast DNA; Biology; Genome; Plastid; Selaginella; Inverted repeat; Genetics; Direct repeat; Mitochondrial DNA; DNA; Chloroplast; Gene; Botany","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001875773,0.0003331307,0.000254548,0.0007809474,0.0004659889,0.000638942,0.0003162867,0.0004758861,0.0008690924],"category_scores_gemma":[0.0004052758,0.0001883036,0.000262804,0.0004976692,0.0004603033,0.0005841358,0.0006566028,0.000434436,0.0003736819],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003376858,"about_ca_system_score_gemma":0.0002536986,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006499388,"about_ca_topic_score_gemma":0.0008371247,"domain_scores_codex":[0.999861,0.00001902569,0.00001343683,0.00006158277,0.00002608198,0.0000187691],"domain_scores_gemma":[0.9997411,0.00003130149,0.0001220239,0.00002992052,0.00003315575,0.00004252113],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002275911,0.00003833998,0.0772211,0.0002612231,0.00009788394,0.0008632326,0.0007006885,0.0006899752,0.8944938,0.0008874975,0.00006437366,0.02445434],"study_design_scores_gemma":[0.00003683744,0.0005162187,0.9011309,0.00005299677,0.0001398014,0.007233776,0.001469295,0.00339168,0.06989131,0.002441641,0.01361665,0.0000789456],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9968271,0.0008629681,0.001511083,0.00006540692,0.000002972965,0.000007263618,0.0001316523,0.00006663389,0.0005249836],"genre_scores_gemma":[0.9973942,0.0002785455,0.001175405,0.00003123113,0.000003416483,0.00001014297,0.0004978307,0.00001523122,0.0005939136],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008690924,"threshold_uncertainty_score":0.002907395,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008913897958125534,"score_gpt":0.2058468669237734,"score_spread":0.1969329689656479,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}