{"id":"W4282939468","doi":"10.1093/nar/gkac376","title":"OmicsNet 2.0: a web-based platform for multi-omics integration and network visual analytics","year":2022,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":174,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Genome Canada","keywords":"Biology; Analytics; Computational biology; Omics; Visual analytics; Web application; Data science; Bioinformatics; Visualization; World Wide Web; Computer science; Data mining","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005942601,0.002971237,0.001799515,0.006022463,0.001140948,0.004523379,0.003694059,0.001424427,0.04764472],"category_scores_gemma":[0.009153248,0.001978326,0.002566623,0.003848047,0.0008436027,0.004330207,0.005578923,0.003712547,0.02205062],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001240117,"about_ca_system_score_gemma":0.002528443,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00398992,"about_ca_topic_score_gemma":0.004727983,"domain_scores_codex":[0.9982035,0.0003380753,0.0002207911,0.0004056619,0.0006623225,0.000169636],"domain_scores_gemma":[0.9961422,0.001787629,0.0003977685,0.0006418329,0.0006206909,0.0004098152],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.003327594,0.000643509,0.009704504,0.004823927,0.001542277,0.001847275,0.00250273,0.01626136,0.05936651,0.04006539,0.6078815,0.2520334],"study_design_scores_gemma":[0.0008772449,0.0002794934,0.01089487,0.0008752502,0.0003498122,0.001012561,0.0004721085,0.1340025,0.04404699,0.07253337,0.7340307,0.0006252134],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.005025217,0.0006430713,0.4103896,0.0008011346,0.000537481,0.0007743757,0.0657182,0.5050677,0.01104328],"genre_scores_gemma":[0.0428045,0.001495928,0.6740982,0.001168526,0.0002791,0.003810131,0.1594245,0.1040151,0.012904],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.04764472,"threshold_uncertainty_score":0.1593874,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04666897519123652,"score_gpt":0.3419103665827385,"score_spread":0.295241391391502,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}