{"id":"W4282967609","doi":"10.1158/1538-7445.am2022-lb503","title":"Abstract LB503: Using JBrowse 2 plugins to visualize cancer genomic data","year":2022,"lang":"en","type":"article","venue":"Cancer Research","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ontario Institute for Cancer Research","funders":"","keywords":"Plug-in; World Wide Web; Computer science; JavaScript; Genomics; Genome; Computational biology; Biology; Programming language; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001946842,0.001279407,0.0006509096,0.003418273,0.0007904958,0.002957182,0.002079449,0.001135497,0.0393492],"category_scores_gemma":[0.004622749,0.001130173,0.001060356,0.002019138,0.0004300097,0.002221476,0.002833028,0.001620016,0.02758143],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006232692,"about_ca_system_score_gemma":0.0009431123,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006778513,"about_ca_topic_score_gemma":0.008982172,"domain_scores_codex":[0.9991273,0.0001416427,0.0000871529,0.0001737479,0.0003844332,0.00008565863],"domain_scores_gemma":[0.9981008,0.0007643538,0.00011061,0.0003614381,0.0004577543,0.0002049724],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0007854997,0.0001130234,0.004225431,0.0007929162,0.0001078533,0.0006067522,0.0005034332,0.002720486,0.02943807,0.005100281,0.8360609,0.1195453],"study_design_scores_gemma":[0.0003367242,0.000106142,0.0112645,0.0004846122,0.00008433694,0.0008138106,0.0002479997,0.04426623,0.06918249,0.01070841,0.8621403,0.0003645356],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.011384,0.00124037,0.2197285,0.001838545,0.001025821,0.0003533634,0.05546029,0.68699,0.02197907],"genre_scores_gemma":[0.1022722,0.002243109,0.4885123,0.003275674,0.0005109743,0.001867563,0.1970172,0.1427821,0.06151874],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.0393492,"threshold_uncertainty_score":0.1316362,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.2221097838262775,"score_gpt":0.4775546873444002,"score_spread":0.2554449035181227,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}