{"id":"W4282982497","doi":"10.1016/j.csbj.2022.06.030","title":"Population genomic analyses reveal evidence for limited recombination in the superbug <i>Candida auris</i> in nature","year":2022,"lang":"en","type":"article","venue":"Computational and Structural Biotechnology Journal","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":31,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Faculty of Science, Prince of Songkla University; Natural Sciences and Engineering Research Council of Canada; McMaster University","keywords":"Biology; Clade; Genetics; Genome; Recombination; Phylogenetic tree; Population; Genetic diversity; Genetic variation; Evolutionary biology; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000526823,0.0000899066,0.0001889658,0.0002788443,0.0003261944,0.00002454705,0.0001231623,0.0001377875,0.00001856023],"category_scores_gemma":[0.0002666074,0.00006338382,0.000059314,0.0003731498,0.00007033291,0.0001038416,0.00003830735,0.0009177563,1.791782e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001954984,"about_ca_system_score_gemma":0.00007481593,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002999212,"about_ca_topic_score_gemma":0.00005465347,"domain_scores_codex":[0.999008,0.0001261534,0.0003145275,0.0001948802,0.0002065187,0.0001499154],"domain_scores_gemma":[0.9994537,0.0002700324,0.0001070052,0.00008027394,0.00006458647,0.00002440154],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001452546,0.00006647436,0.9555193,0.00006748981,0.00004542226,0.00007760694,0.0005389512,0.006719233,0.009168567,0.00405089,0.0006152015,0.02167836],"study_design_scores_gemma":[0.0009221741,0.0002492763,0.9465574,0.00003477255,0.00001973762,0.0005888044,0.0005007747,0.01008913,0.00006323937,0.04084674,0.0000593377,0.00006860664],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9832506,0.001805906,0.0002738993,0.01424635,0.0001146479,0.0002806834,0.000011623,0.00001171384,0.000004646787],"genre_scores_gemma":[0.9977716,0.00008355061,0.001320945,0.0006698677,0.00004449011,0.00001226174,0.00007705885,0.000004365536,0.00001588231],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03679585,"threshold_uncertainty_score":0.3987246,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04962153394203868,"score_gpt":0.3700494727873279,"score_spread":0.3204279388452892,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}