{"id":"W4283011420","doi":"10.1038/s41396-022-01261-4","title":"Endosymbiont population genomics sheds light on transmission mode, partner specificity, and stability of the scaly-foot snail holobiont","year":2022,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Parasite Biology and Host Interactions","field":"Environmental Science","cited_by":23,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"Japan Agency for Marine-Earth Science and Technology; Japan Society for the Promotion of Science; Ministry of Education, Culture, Sports, Science and Technology; Hong Kong University of Science and Technology; China Ocean Mineral Resources Research and Development Association; National Natural Science Foundation of China; Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)","keywords":"Biology; Holobiont; Snail; Transmission (telecommunications); Population genomics; Population; Genomics; Evolutionary biology; Ecology; Genetics; Genome; Gene; Bacteria; Symbiosis; Environmental health","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000521021,0.00007562547,0.00009082177,0.00001659559,0.000830606,0.00001502794,0.0002296173,0.00003226514,0.00245421],"category_scores_gemma":[0.000009819217,0.00004055435,0.00007784428,0.00007623371,0.0001067654,0.0000689266,0.0001211106,0.000404438,0.00001045157],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002017295,"about_ca_system_score_gemma":0.000009411397,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001063643,"about_ca_topic_score_gemma":0.00005584707,"domain_scores_codex":[0.9990329,0.0003018974,0.0002135723,0.0001206929,0.0002095738,0.0001213969],"domain_scores_gemma":[0.9995729,0.00005498612,0.0001406083,0.0001796264,0.000005355663,0.00004652058],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006117537,0.0006087889,0.5734257,0.000003977042,0.00005193328,0.000003368674,0.004042655,0.01473717,0.3812135,0.0008584534,0.001807353,0.02263531],"study_design_scores_gemma":[0.0002237324,0.0001478249,0.9571834,0.000005139706,0.00002496247,0.0001423431,0.0002265775,0.001502513,0.01731672,0.002228006,0.02091947,0.00007936133],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9925914,0.00003018288,0.0001720778,0.003941606,0.0002450039,0.0001218811,0.0000139553,0.000004646492,0.002879255],"genre_scores_gemma":[0.9994431,0.00003559027,0.00004696609,0.0001497191,0.00004484775,0.000003608945,0.000001984469,0.000004338919,0.0002698993],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3837577,"threshold_uncertainty_score":0.9984577,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02051510236697679,"score_gpt":0.2904453464713243,"score_spread":0.2699302441043475,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}