{"id":"W4283032787","doi":"10.1093/ve/veac056","title":"A new perspective on the evolution and diversity of the genus <i>Amdoparvovirus</i> (family <i>Parvoviridae</i>) through genetic characterization, structural homology modeling, and phylogenetics","year":2022,"lang":"en","type":"article","venue":"Virus Evolution","topic":"Virus-based gene therapy research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"Memorial University of Newfoundland","funders":"National Institute of General Medical Sciences; National Institutes of Health","keywords":"Biology; Phylogenetic tree; Phylogenetics; Mink; Virus classification; Genetics; Evolutionary biology; Viral evolution; Genome; Gene; Ecology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022552,0.0001931509,0.0001534498,0.00005352454,0.001020282,0.00001832354,0.0003660569,0.00009763043,0.00002494351],"category_scores_gemma":[0.00004844474,0.0001502171,0.00007733921,0.0002544065,0.0002735271,0.000009549181,0.0009356488,0.0002381273,0.000001904731],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002153512,"about_ca_system_score_gemma":0.0002398657,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001419532,"about_ca_topic_score_gemma":0.0003117327,"domain_scores_codex":[0.9982613,0.0004498236,0.0002069138,0.0004500418,0.0003578631,0.0002740485],"domain_scores_gemma":[0.9991645,0.00002084127,0.000147724,0.0004697747,0.0001385081,0.00005862391],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001333323,0.0000416211,0.007501916,0.000008131632,0.00008884881,0.00000101401,0.0006700848,0.006549723,0.9806565,0.001988817,0.0004281759,0.0007318277],"study_design_scores_gemma":[0.008451151,0.01487276,0.5498661,0.00005417575,0.00058037,0.0003634976,0.006623765,0.07216952,0.2970651,0.04085226,0.006764077,0.002337237],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9895222,0.003394279,0.005644492,0.0004915231,0.0001711328,0.0004933343,0.0001851996,0.00001062106,0.00008718913],"genre_scores_gemma":[0.9987279,0.0003381594,0.0001063275,0.0004880603,0.0001424486,0.00002767998,0.00002936982,0.00002259484,0.0001174575],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6835914,"threshold_uncertainty_score":0.7847289,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01497485737169435,"score_gpt":0.2464767722996399,"score_spread":0.2315019149279455,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}