{"id":"W4283073921","doi":"10.3390/jof8060637","title":"Comparative Analysis of Transcriptomes of Ophiostoma novo-ulmi ssp. americana Colonizing Resistant or Sensitive Genotypes of American Elm","year":2022,"lang":"en","type":"article","venue":"Journal of Fungi","topic":"Forest Insect Ecology and Management","field":"Environmental Science","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph; University of Victoria; Université Laval","funders":"Genome Canada","keywords":"Biology; Dutch elm disease; Gene; Transcriptome; Genetics; Ophiostoma; Virulence; Ceratocystis; Mutant; RNA-Seq; Gene expression profiling; Gene expression; Fungus; Botany","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005063883,0.0001106526,0.0007835929,0.0003393183,0.00008766295,0.000002770002,0.0002635765,0.00001796438,0.001210409],"category_scores_gemma":[0.00002800734,0.00009112343,0.0002527419,0.001716668,0.0005188174,0.00008606737,0.0001114669,0.0001635653,0.000002094446],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001837743,"about_ca_system_score_gemma":0.00004657467,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009053624,"about_ca_topic_score_gemma":0.001088091,"domain_scores_codex":[0.9983944,0.0002113647,0.0006605343,0.0001372493,0.0004276275,0.0001687861],"domain_scores_gemma":[0.9981629,0.0002040458,0.001366085,0.0001527201,0.00005447324,0.00005972453],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.009074679,0.001738342,0.07859233,0.00008284635,0.009679991,0.0004766487,0.0298286,0.1213541,0.7401788,0.001126209,0.003904274,0.003963114],"study_design_scores_gemma":[0.000605225,0.00436666,0.9638386,0.00001765992,0.001572861,0.00003375348,0.01125407,0.0012776,0.01469951,0.0000790786,0.002083477,0.0001715206],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977092,0.0002068511,0.0002350006,0.0001475203,0.00007389526,0.0001145976,0.00007499875,0.0000030354,0.001434878],"genre_scores_gemma":[0.9978552,0.00008356625,0.001796105,0.0001287772,0.000007631994,0.000002809898,0.000002589543,0.000005423882,0.0001179023],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8852463,"threshold_uncertainty_score":0.9997026,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0155249470142013,"score_gpt":0.2606831804430332,"score_spread":0.2451582334288319,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}