{"id":"W4283169743","doi":"10.3389/fgene.2022.891702","title":"RNA-Seq and Gene Ontology Analysis Reveal Differences Associated With Low R/FR-Induced Shade Responses in Cultivated Lentil and a Wild Relative","year":2022,"lang":"en","type":"article","venue":"Frontiers in Genetics","topic":"Plant Molecular Biology Research","field":"Agricultural and Biological Sciences","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan; Saskatchewan Research Council (Canada)","funders":"College of Agriculture and Bioresources, University of Saskatchewan; Genome Prairie; Universidad de León; Saskatchewan Pulse Growers; University of Saskatchewan; Genome Canada","keywords":"WRKY protein domain; Biology; Transcriptome; MYB; Gene; Flavonoid biosynthesis; Jasmonic acid; RNA-Seq; Gene expression; Germplasm; Auxin; Gene expression profiling; Gibberellin; Shade avoidance; Botany; Genetics; Arabidopsis; Mutant","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000446332,0.000150649,0.000371196,0.0001427758,0.0001787676,0.00002513968,0.0002115664,0.0001447518,0.00001702048],"category_scores_gemma":[0.0001707414,0.00007316198,0.00003453386,0.001275404,0.0001908387,0.00003251357,0.000203378,0.0003628247,1.812485e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007966893,"about_ca_system_score_gemma":0.00002452256,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000365377,"about_ca_topic_score_gemma":0.003997929,"domain_scores_codex":[0.9978188,0.0009370251,0.000218463,0.000450569,0.0002146911,0.0003604347],"domain_scores_gemma":[0.9994992,0.00023339,0.0001004159,0.00005934271,0.00003292163,0.00007475255],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000305581,0.00007360814,0.9222067,0.00000150948,0.0001807586,0.00007675684,0.0002518123,0.00002367374,0.07429968,0.000003654153,0.00007779306,0.002498453],"study_design_scores_gemma":[0.0004292738,0.000562127,0.9951488,0.00001056591,0.00005542498,0.000009753894,0.0005758003,0.001483924,0.001299216,0.0001966098,0.00005516918,0.0001733785],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977544,0.001173924,0.00001542505,0.0005692791,0.00004374008,0.0002356805,0.0001585337,0.00001358766,0.0000354361],"genre_scores_gemma":[0.9987732,0.0002675897,0.0004860113,0.00008065972,0.000008584638,0.00003828415,0.0001461955,0.00000145265,0.0001980612],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07300046,"threshold_uncertainty_score":0.2983459,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02045374005127948,"score_gpt":0.2329409374470101,"score_spread":0.2124871973957306,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}