{"id":"W4283214544","doi":"10.3201/eid2807.211528","title":"One Health Genomic Analysis of Extended-Spectrum β-Lactamase‒Producing <i>Salmonella enterica</i>, Canada, 2012‒2016","year":2022,"lang":"en","type":"article","venue":"Emerging infectious diseases","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Public Health Agency; Public Health Agency of Canada","keywords":"Salmonella enterica; Serotype; Salmonella; Biology; Plasmid; Cephalosporin; Microbiology; Subclade; Antibiotic resistance; Multiple drug resistance; Virology; Drug resistance; Antibiotics; Bacteria; Gene; Genetics; Clade; Phylogenetics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002313657,0.00037066,0.0002334573,0.001701395,0.001544447,0.0008521643,0.0003584568,0.0002825409,0.002265005],"category_scores_gemma":[0.0005579625,0.0001578633,0.0004606645,0.002476018,0.0004646356,0.0001006113,0.000448449,0.00040583,0.0004681745],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.008941969,"about_ca_system_score_gemma":0.01467326,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.913885,"about_ca_topic_score_gemma":0.9563214,"domain_scores_codex":[0.9996599,0.000009668611,0.00001344475,0.00007475582,0.0001352979,0.0001070117],"domain_scores_gemma":[0.9993766,0.00001582836,0.00005346736,0.00001359471,0.0004176935,0.0001228286],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001730897,0.0003001528,0.7609329,0.0005000411,0.0004184408,0.002609611,0.002964014,0.00146767,0.1067096,0.00199462,0.02345879,0.09691323],"study_design_scores_gemma":[0.00001878461,0.0001335272,0.9672189,0.00007141277,0.00007668832,0.000520272,0.001515622,0.0003756094,0.00336972,0.00008252493,0.02659837,0.00001862091],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8952688,0.004098147,0.001545733,0.001152016,0.0001060461,0.0001697167,0.08335436,0.0001205379,0.01418464],"genre_scores_gemma":[0.9365836,0.003522453,0.002884843,0.0007669283,0.00002605013,0.00004998819,0.04108169,0.00005196745,0.01503247],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.086115,"threshold_uncertainty_score":0.1732442,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005139816982633058,"score_gpt":0.2284413818202224,"score_spread":0.2233015648375893,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}