{"id":"W4283220241","doi":"10.1128/mbio.00864-22","title":"A Reverse Genetic Approach for Studying sRNAs in Chlamydia trachomatis","year":2022,"lang":"en","type":"article","venue":"mBio","topic":"Veterinary medicine and infectious diseases","field":"Veterinary","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; University of California, Irvine; National Institutes of Health; Université de Sherbrooke","keywords":"Chlamydia trachomatis; Biology; RNA; Small RNA; Genetics; Messenger RNA; Chlamydia; Gene; Computational biology; Virology","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000218103,0.0001229371,0.0001922352,0.0001342442,0.000200541,0.00001480331,0.0001557818,0.00002757091,0.000587445],"category_scores_gemma":[0.0000377108,0.000128766,0.00008751158,0.0002119192,0.00002261271,0.00007214247,0.0001134428,0.0001500484,0.0000131441],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001102471,"about_ca_system_score_gemma":0.00003640575,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001736408,"about_ca_topic_score_gemma":0.00000444176,"domain_scores_codex":[0.9989494,0.0001184879,0.0002334456,0.000278314,0.0001625724,0.0002577797],"domain_scores_gemma":[0.9995825,0.00004974592,0.00005725624,0.0002365499,0.00001410245,0.00005981232],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00438163,0.01005598,0.7272649,0.001889379,0.0004617387,0.004112144,0.02145956,0.00267383,0.02831786,0.0004446927,0.1170926,0.08184566],"study_design_scores_gemma":[0.007210773,0.00781246,0.9160296,0.00005398522,0.0001555682,0.002186919,0.009662583,0.014053,0.00004706178,0.0004859544,0.0414236,0.0008784747],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9949269,0.0003906625,0.0004383734,0.00005267257,0.0002031652,0.0007366579,0.00004642227,0.00007764011,0.003127539],"genre_scores_gemma":[0.9966114,0.00001019812,0.001497827,0.0003876524,0.0001281344,0.0009942662,0.00004361669,0.00002811534,0.0002987481],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1887647,"threshold_uncertainty_score":0.6432111,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.09518555264314331,"score_gpt":0.3246136094552101,"score_spread":0.2294280568120667,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}