{"id":"W4283315834","doi":"10.1111/eva.13441","title":"Co‐evolutionary adaptations of <i>Acinetobacter baumannii</i> and a clinical carbapenemase‐encoding plasmid during carbapenem exposure","year":2022,"lang":"en","type":"article","venue":"Evolutionary Applications","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity","funders":"Medical Research Council; National Natural Science Foundation of China","keywords":"Acinetobacter baumannii; Biology; Plasmid; Experimental evolution; Genetics; Imipenem; Carbapenem; Evolutionary dynamics; Phenotype; Gene duplication; Genotype; Population; Microbiology; Gene; Antibiotic resistance; Antibiotics; Bacteria; Pseudomonas aeruginosa","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002021712,0.0001767109,0.0002140855,0.00008426303,0.0006468662,0.00001042611,0.0002737621,0.0001058584,0.0001320879],"category_scores_gemma":[0.00003855175,0.0002104169,0.0001297144,0.0002176041,0.0002930204,0.0000157843,0.0002290231,0.0002015542,0.000008437391],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006950816,"about_ca_system_score_gemma":0.0001982912,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001994583,"about_ca_topic_score_gemma":0.00001340629,"domain_scores_codex":[0.9982634,0.0001539717,0.0005643589,0.0005357325,0.0002434181,0.0002390947],"domain_scores_gemma":[0.9989367,0.00007049197,0.000243482,0.0005262553,0.0001159499,0.0001071896],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003230965,0.0006192091,0.5606861,0.00007438977,0.0002423792,0.000005841077,0.00009186485,0.001477904,0.4216946,0.004176334,0.01008416,0.0005241232],"study_design_scores_gemma":[0.0008805173,0.0002536363,0.9007826,0.00001433696,0.00006978903,0.0001315354,0.0005385607,0.0002512255,0.002359943,0.0002340545,0.09414566,0.000338151],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9929639,0.002136078,0.001402011,0.0002302531,0.0001143009,0.0005808535,0.0005198042,0.00003307415,0.002019745],"genre_scores_gemma":[0.9936,0.0005236814,0.003327089,0.00008786427,0.0002433053,0.0003182704,0.000918236,0.00002916759,0.000952451],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4193347,"threshold_uncertainty_score":0.858055,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01227251880281555,"score_gpt":0.2705699860233332,"score_spread":0.2582974672205176,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}