{"id":"W4283451895","doi":"10.3390/v14061152","title":"CAVES: A Novel Tool for Comparative Analysis of Variant Epitope Sequences","year":2022,"lang":"en","type":"article","venue":"Viruses","topic":"vaccines and immunoinformatics approaches","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"","keywords":"Epitope; Computer science; Computational biology; Cave; In silico; Source code; Biology; Data mining; Antigen; Genetics; Ecology; Programming language; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00407608,0.002866585,0.00216018,0.004671945,0.001680621,0.002796659,0.004414552,0.001722704,0.06310272],"category_scores_gemma":[0.01098932,0.001543405,0.003178471,0.004029409,0.0008743681,0.00400242,0.00445366,0.002903391,0.01738984],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008165576,"about_ca_system_score_gemma":0.003009262,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003930534,"about_ca_topic_score_gemma":0.00672057,"domain_scores_codex":[0.9979135,0.0003893424,0.0002521486,0.0006536841,0.0005721322,0.0002190891],"domain_scores_gemma":[0.9961672,0.002320268,0.0003344882,0.0006035304,0.0003694717,0.0002050105],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.003069717,0.0003841617,0.01018417,0.004191665,0.001195786,0.001375733,0.0009973942,0.009258381,0.02612346,0.01834888,0.7492471,0.1756236],"study_design_scores_gemma":[0.001715036,0.0005277662,0.01332811,0.001204963,0.0005799533,0.002478526,0.0004298634,0.1158373,0.0270875,0.04532962,0.7909534,0.000527871],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"software","genre_gemma":"methods","genre_scores_codex":[0.01447454,0.001304727,0.2900057,0.0004471739,0.0006922669,0.0006935608,0.2143581,0.4667959,0.01122809],"genre_scores_gemma":[0.05494277,0.001025668,0.5370395,0.0007995765,0.0002298027,0.003475995,0.3261909,0.0698042,0.006491639],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.06310272,"threshold_uncertainty_score":0.2110996,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05534817480204814,"score_gpt":0.3025779691161971,"score_spread":0.247229794314149,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}